~~NOTOC~~ ===== sp_filterlocal ===== 3D Local Filter: Locally filter maps according to the local resolution determined by [[pipeline:localres:sp_locres|sp_locres]]. \\ ===== Usage ===== Usage in command line sp_filterlocal.py input_volume locres_volume maskfile outputfile --radius=PARTICLE_RADIUS --falloff=falloff --MPI \\ ===== Typical usage ===== sp_locres exists in for both MPI and non-MPI versions. mpirun -np 32 sp_filterlocal.py refinementdir/main002/vol0.hdf locres.hdf locfilt.hdf --radius=28 --MPI \\ ===== Input ===== === Main Parameters === ; input_volume : Input volume: Path to input volume file containing the 3D density map. (default required string) ; locres_volume : Local resolution file: Path to volume file containing the local resolution estimate produced by [[pipeline:localres:sp_locres|sp_locres]]. (default required string) ; maskfile : 3D mask: Defines the region where the local filtering should be applied. (default none) ; outputfile : Output volume: Path to output volume file contained locally-filtered 3D density map. (default required string) ; %%--%%radius : Mask radius [Pixels]: In case no mask is provided, a hard sphere will be used. Use radius of the particle. (default -1) ; %%--%%falloff : Low-pass filter fall-off [1/Pixels]: The program uses a tangent low-pass filter. Specify with absolute frequency. (default 0.1) \\ === Advanced Parameters === ; %%--%%MPI : Use MPI: (default False) \\ ===== Output ===== \\ ===== Description ===== \\ ==== Method ==== \\ ==== Reference ==== \\ ==== Developer Notes ==== \\ ==== Author / Maintainer ==== Pawel A. Penczek \\ ==== Keywords ==== Category 1:: APPLICATIONS \\ ==== Files ==== sphire/bin/sp_filterlocal.py \\ ==== See also ==== [[pipeline:meridien:sp_meridien|sp_meridien]], [[[pipeline:utilities:sp_process|sp_process]], and [[pipeline:localres:sp_locres|sp_locres]]. \\ ==== Maturity ==== Stable:: Has been evaluated and tested. Please let us know if there are any bugs. \\ ==== Bugs ==== There are no known bugs so far. \\