<?xml version='1.0' encoding='UTF-8' standalone='no'?>
<section xmlns="http://docbook.org/ns/docbook" version="5.0" xmlns:xlink="http://www.w3.org/1999/xlink" xml:id="_bmodmap_8cpp">
<title>/Users/bernard/b20/bsoft/src/bmodmap.cpp File Reference</title>
<indexterm><primary>/Users/bernard/b20/bsoft/src/bmodmap.cpp</primary></indexterm>
<para>

<para>A tool to genrate a map from a model. </para>
 
</para>
<programlisting>#include &quot;rwmodel.h&quot;
#include &quot;model_map.h&quot;
#include &quot;rwimg.h&quot;
#include &quot;model_select.h&quot;
#include &quot;model_util.h&quot;
#include &quot;utilities.h&quot;
#include &quot;options.h&quot;
#include &quot;timer.h&quot;
</programlisting><simplesect>
    <title>Functions    </title>
        <itemizedlist>
            <listitem><para>int <link linkend="_bmodmap_8cpp_1a3c04138a5bfe5d72780bb7e82a18e627">main</link> (int argc, char **argv)</para>
</listitem>
        </itemizedlist>
</simplesect>
<simplesect>
    <title>Variables    </title>
        <itemizedlist>
            <listitem><para>int <link linkend="_bmodmap_8cpp_1a0b2caeb4b6f130be43e5a2f0267dd453">verbose</link></para>
</listitem>
            <listitem><para>const char * <link linkend="_bmodmap_8cpp_1a4de0ad4c7190962494815c0fa7f948df">use</link> []</para>
</listitem>
        </itemizedlist>
</simplesect>
<section>
<title>Detailed Description</title>

<para>A tool to genrate a map from a model. </para>

<para><formalpara><title>Author: </title>

<para>Bernard Heymann </para>
</formalpara>
<formalpara><title>Date: </title>

<para>Created: 20081112 </para>

<para>Modified: 20110804 </para>
</formalpara>
</para>
</section>
<section>
<title>Function Documentation</title>
<anchor xml:id="_bmodmap_8cpp_1a3c04138a5bfe5d72780bb7e82a18e627"/>    <section>
    <title>main()</title>
<indexterm><primary>main</primary><secondary>bmodmap.cpp</secondary></indexterm>
<indexterm><primary>bmodmap.cpp</primary><secondary>main</secondary></indexterm>
<para><computeroutput>int main (int argc, char ** argv)</computeroutput></para><para>
Definition at line 49 of file bmodmap.cpp.</para>
</section>
</section>
<section>
<title>Variable Documentation</title>
<anchor xml:id="_bmodmap_8cpp_1a4de0ad4c7190962494815c0fa7f948df"/>    <section>
    <title>use</title>
<indexterm><primary>use</primary><secondary>bmodmap.cpp</secondary></indexterm>
<indexterm><primary>bmodmap.cpp</primary><secondary>use</secondary></indexterm>
<para><computeroutput>const char* use[]</computeroutput></para><emphasis role="strong">Initial value:</emphasis><programlisting>=&#32;{
<emphasis role="stringliteral">&quot;&#32;&quot;</emphasis>,
<emphasis role="stringliteral">&quot;Usage:&#32;bmodmap&#32;[options]&#32;in.star&quot;</emphasis>,
<emphasis role="stringliteral">&quot;--------------------------------&quot;</emphasis>,
<emphasis role="stringliteral">&quot;Generates&#32;a&#32;map&#32;from&#32;a&#32;model.&quot;</emphasis>,
<emphasis role="stringliteral">&quot;&#32;&quot;</emphasis>,
<emphasis role="stringliteral">&quot;Actions:&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-all&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;Reset&#32;selection&#32;to&#32;all&#32;components&#32;before&#32;other&#32;selections.&quot;</emphasis>,
<emphasis role="stringliteral">&quot;&#32;&quot;</emphasis>,
<emphasis role="stringliteral">&quot;Parameters:&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-verbose&#32;7&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;Verbosity&#32;of&#32;output.&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-datatype&#32;u&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;Force&#32;writing&#32;of&#32;a&#32;new&#32;image&#32;data&#32;type.&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-origin&#32;0,0,0&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;Origin&#32;placement&#32;within&#32;image&#32;(default&#32;0,0,0).&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-size&#32;10,10,10&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;Map&#32;size,&#32;input&#32;map&#32;size&#32;otherwise&#32;(voxels).&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-sampling&#32;1&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;Sampling&#32;(default&#32;1&#32;angstrom/voxel).&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-sigma&#32;3.5&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;Density&#32;decay&#32;around&#32;a&#32;component&#32;(default&#32;10).&quot;</emphasis>,
<emphasis role="stringliteral">&quot;&#32;&quot;</emphasis>,
<emphasis role="stringliteral">&quot;Input:&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-parameters&#32;param.star&#32;&#32;&#32;Input&#32;parameter&#32;file.&quot;</emphasis>,
<emphasis role="stringliteral">&quot;&#32;&quot;</emphasis>,
<emphasis role="stringliteral">&quot;Output:&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-output&#32;model.star&#32;&#32;&#32;&#32;&#32;&#32;&#32;New&#32;model&#32;file.&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-map&#32;density.map&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;New&#32;map&#32;file.&quot;</emphasis>,
<emphasis role="stringliteral">&quot;&#32;&quot;</emphasis>,
NULL
}
</programlisting><para>
Definition at line 22 of file bmodmap.cpp.</para>
    </section><anchor xml:id="_bmodmap_8cpp_1a0b2caeb4b6f130be43e5a2f0267dd453"/>    <section>
    <title>verbose</title>
<indexterm><primary>verbose</primary><secondary>bmodmap.cpp</secondary></indexterm>
<indexterm><primary>bmodmap.cpp</primary><secondary>verbose</secondary></indexterm>
<para><computeroutput>int verbose</computeroutput></para></section>
</section>
</section>
