| Bsoft 2.0.5 Bernard's software package

Here is a list of all file members with links to the files they belong to:

### - c -

- C_curve() : ctf.h , ctf.cpp
- calcCTF() : bshow_ctf.tcl
- calcHistogram() : bshow_graph.tcl
- calcPowerSpec() : bshow_image.tcl
- calcR() : bshow_ctf.tcl
- calcRadialAverage() : bshow_graph.tcl
- calcRPS() : bshow_ctf.tcl
- calcUnitCellVectors() : bshow_xtal.tcl
- CALIB : rwSUPRIM.h
- canvas2Photo() : bshow_misc.tcl
- capture() : bshow_misc.tcl
- cart_pol_Fourier_rad() : sin_gal.cpp
- catmull_rom_interpolate() : spline.cpp
- cc_two_way() : Bimage_align.cpp
- CCP4SIZE : rwCCP4.h
- CELL_A : mol_tags.h
- CELL_ALPHA : mol_tags.h
- CELL_B : mol_tags.h
- CELL_BETA : mol_tags.h
- CELL_C : mol_tags.h
- CELL_GAMMA : mol_tags.h
- Centered : Bimage.h
- centerOrigin() : bshow_image.tcl
- CentHerm : Bimage.h
- change_views_to_asymmetric_unit() : symmetry.h , symmetry.cpp
- changeDataType() : bshow_image.tcl
- changeSlice() : bshow_magnify.tcl
- check_length() : bshow_magnify.tcl
- CHECK_PPX : mg_processing.h
- checkParamFile() : bshow_param.tcl
- checkType() : bshow_misc.tcl
- CLASS_AVERAGE : mg_tags.h
- clean_line() : rwstar.cpp
- closest_point_disc_distance2() : mg_subtomo.h , mg_subtomo.cpp
- closest_point_line() : mg_subtomo.h , mg_subtomo.cpp
- closest_point_line_distance2() : mg_subtomo.h , mg_subtomo.cpp
- cmm_views() : jviews.cpp
- COL_ORG : rwSUPRIM.h
- command_line() : string_util.h , string_util.cpp
- command_line_time() : utilities.h , utilities.cpp
- COMMENT : mg_tags.h , model_tags.h
- CommentItem : rwstar.h
- comp_associated_links_kill() : rwmodel.h , rwmodel.cpp
- comp_count_connected() : model_poly.cpp
- comp_link_check() : model_path.cpp
- comp_pick_next() : model_path.cpp
- comp_select_one() : model_select.cpp
- comp_set_fom_sym() : model_map.cpp
- comp_type_kill() : rwmodel.h , rwmodel.cpp
- comp_type_list_kill() : rwmodel.h , rwmodel.cpp
- compare_mol_map() : molecule_to_map.h , molecule_to_map.cpp
- complement_sequence() : seq_util.h , seq_util.cpp
- COMPLEX16_DATA : rwDM.h
- COMPLEX8_DATA : rwDM.h
- complex_unpack_combined_first() : Complex.h
- complex_unpack_combined_second() : Complex.h
- COMPLINK : model_tags.h
- COMPLINK_1 : model_tags.h
- COMPLINK_2 : model_tags.h
- COMPLINK_ALPHA : model_tags.h
- COMPLINK_ANGLE : model_tags.h
- COMPLINK_BLUE : model_tags.h
- COMPLINK_FOM : model_tags.h
- COMPLINK_GREEN : model_tags.h
- COMPLINK_ID : model_tags.h
- COMPLINK_RADIUS : model_tags.h
- COMPLINK_RED : model_tags.h
- COMPLINK_SELECT : model_tags.h
- COMPONENT : model_tags.h
- component_6digit_type() : model_poly.cpp
- component_add() : rwmodel.h , rwmodel.cpp
- component_add_if_not_exist() : rwmodel_bild.cpp
- COMPONENT_ALPHA : model_tags.h
- component_angular_potential() : model_mechanics.cpp
- COMPONENT_BLUE : model_tags.h
- component_color() : tcltk_bmodel.cpp
- component_copy() : rwmodel.h , rwmodel.cpp
- component_count() : rwmodel.h , rwmodel.cpp , tcltk_bmodel.cpp
- component_count_selected() : tcltk_bmodel.cpp
- component_coverage() : model_occupancy.cpp
- component_create() : tcltk_bmodel.cpp
- component_delete() : tcltk_bmodel.cpp
- COMPONENT_DENSITY : model_tags.h
- component_distance() : tcltk_bmodel.cpp
- component_find() : rwmodel.h , rwmodel.cpp
- component_find_shift() : model_extract_build.cpp
- component_find_shift2() : model_extract_build.cpp
- COMPONENT_FOM : model_tags.h
- component_fom() : tcltk_bmodel.cpp
- component_get_array() : model_util.h , model_util.cpp
- COMPONENT_GREEN : model_tags.h
- component_hand() : model_views.h , model_views.cpp
- component_harmonic_potential() : model_mechanics.cpp
- COMPONENT_ID : model_tags.h
- component_ids() : tcltk_bmodel.cpp
- component_img_coords() : tcltk_bmodel.cpp
- component_kill() : rwmodel.h , rwmodel.cpp
- component_lennard_jones_potential() : model_mechanics.cpp
- component_list_kill() : rwmodel.h , rwmodel.cpp
- component_location() : tcltk_bmodel.cpp
- component_morse_potential() : model_mechanics.cpp
- component_move() : tcltk_bmodel.cpp
- component_normal() : model_views.cpp
- component_plane() : model_util.h , model_util.cpp
- component_radial_potential() : model_mechanics.cpp
- COMPONENT_RADIUS : model_tags.h
- component_radius() : tcltk_bmodel.cpp
- COMPONENT_RED : model_tags.h
- component_refine() : model_extract_build.cpp
- component_refine_random() : model_extract_build.cpp
- component_select() : tcltk_bmodel.cpp
- COMPONENT_SELECT : model_tags.h
- component_soft_potential() : model_mechanics.cpp
- component_type_add() : rwmodel.h , rwmodel.cpp
- component_type_copy() : rwmodel.cpp , rwmodel.h
- COMPONENT_TYPE_ID : model_tags.h
- component_view() : model_views.cpp
- COMPONENT_VIEW_ANGLE : model_tags.h
- COMPONENT_VIEW_X : model_tags.h
- COMPONENT_VIEW_Y : model_tags.h
- COMPONENT_VIEW_Z : model_tags.h
- COMPONENT_X : model_tags.h
- COMPONENT_Y : model_tags.h
- COMPONENT_Z : model_tags.h
- componentCreateSelect() : bshow_model.tcl
- componentDelete() : bshow_model.tcl
- componentDraw() : bshow_model.tcl
- componentMove() : bshow_model.tcl
- componentMoveSelectedUpDown() : bshow_model.tcl
- components_from_2D_particles() : bmod2part.cpp
- components_from_3D_particles() : bmod2part.cpp
- componentsDrawAll() : bshow_model.tcl
- componentSelect() : bshow_model.tcl
- componentsToParticles() : bshow_model.tcl
- componentSymmetry() : bshow_model.tcl
- CompoundType : Bimage.h
- COMPTYPE : model_tags.h
- comptype_count() : tcltk_bmodel.cpp
- comptype_count_selected() : tcltk_bmodel.cpp
- comptype_create_update() : tcltk_bmodel.cpp
- comptype_deselect() : tcltk_bmodel.cpp
- COMPTYPE_FILENAME : model_tags.h
- comptype_first_selected() : tcltk_bmodel.cpp
- COMPTYPE_FOM : model_tags.h
- COMPTYPE_ID : model_tags.h
- comptype_ids() : tcltk_bmodel.cpp
- comptype_list() : tcltk_bmodel.cpp
- COMPTYPE_MAP_NUMBER : model_tags.h
- COMPTYPE_MASS : model_tags.h
- COMPTYPE_NUMBER : model_tags.h
- COMPTYPE_SELECT : model_tags.h
- comptype_select() : tcltk_bmodel.cpp
- configCursor() : bshow_misc.tcl
- configCursor_destroyWindow() : bshow_misc.tcl
- constructCommand() : brun_panel.tcl
- CONTSIZE : rwmgIMOD.h
- CONV_SWITCH : rwmgEMX.cpp
- convertImageToModel() : bshow_model.tcl
- copy180() : gal_ricoI.cpp
- copy_I_part_rad() : sin_gal.cpp , sin_gal.h
- copy_II_part_rad() : sin_gal.h , sin_gal.cpp
- copy_item() : linked_list.cpp , linked_list.h
- copy_list() : linked_list.h , linked_list.cpp
- copy_phi() : pocs_tool.cpp
- copy_sin() : sin_gal.cpp , pocs_tool.cpp
- correlation_coefficient_adjust() : mg_orient.cpp
- count_list() : linked_list.cpp , linked_list.h
- COVERAGE : mg_processing.h
- create_table() : proj_tool.h , proj_tool.cpp
- createMgParam() : bshow_param.tcl
- createUpdateComponentType() : bshow_model.tcl
- cropImage() : bshow_image.tcl
- cross() : Vector3.h
- Crystallography() : bshow_xtal.tcl
- CTF() : bshow_ctf.tcl , mg_tags.h
- CTF_ALPHA : mg_tags.h
- CTF_AMP : mg_tags.h
- CTF_AMP_SHIFT : mg_tags.h
- CTF_AST_ANG : mg_tags.h
- CTF_BASELINE : mg_tags.h
- CTF_CC : mg_tags.h
- CTF_CS : mg_tags.h
- CTF_DE : mg_tags.h
- CTF_DEF_AVG : mg_tags.h
- CTF_DEF_DEV : mg_tags.h
- CTF_DEF_MAX : mg_tags.h
- CTF_DEF_MIN : mg_tags.h
- CTF_ENVELOPE : mg_tags.h
- ctf_fit_baseline() : mg_ctf_fit.cpp
- ctf_fit_baseline_bump() : mg_ctf_fit.cpp
- ctf_fit_double_gaussian_baseline() : mg_ctf_fit.cpp
- ctf_fit_double_gaussian_envelope() : mg_ctf_fit.cpp
- ctf_fit_eman_to_baseline() : mg_ctf_fit.cpp
- ctf_fit_envelope() : mg_ctf_fit.cpp
- ctf_fit_gaussian() : mg_ctf_fit.cpp
- ctf_fit_polynomial() : mg_ctf_fit.cpp
- ctf_from_starblock() : rwmgSTAR.cpp
- ctf_test_defocus() : mg_ctf_fit.cpp
- ctf_to_starblock() : rwmgSTAR.cpp
- CTF_VOLTAGE : mg_tags.h
- CTF_ZERO : mg_tags.h
- cylinder_edge() : Bimage_edit.cpp