| Bsoft 2.0.5 Bernard's software package

Here is a list of all file members with links to the files they belong to:

### - m -

- M_PI : utilities.h
- M_PI_2 : utilities.h
- M_PI_4 : utilities.h
- Magnify() : bshow_magnify.tcl
- main() : bafm.cpp , bbild.cpp , bdual.cpp , bmatch.cpp , bsplit.cpp , bsplitmol.cpp , bmatrix.cpp , bspr.cpp , bstar.cpp , bedge.cpp , bmaxpow.cpp , bsupix.cpp , bsurf.cpp , bmd.cpp , bsym.cpp , bsymcomp.cpp , bcat.cpp , beditimg.cpp , bmedian.cpp , btile.cpp , btomaln.cpp , bmg.cpp , btomo.cpp , btompart.cpp , bfcc.cpp , bmg2imod.cpp , btomrec.cpp , btomres.cpp , bmgalign.cpp , btrack.cpp , btree.cpp , balign.cpp , bcatmol.cpp , bfft.cpp , bmgconvert.cpp , btube.cpp , bwater.cpp , bmgft.cpp , bxb.cpp , bxml.cpp , bfil.cpp , bmgtransfer.cpp , bzfft.cpp , dcount.cpp , bmissing.cpp , dhand.cpp , dimgstats.cpp , bcatseq.cpp , bfile.cpp , bmm.cpp , dmerge.cpp , emgrand.cpp , bmod2part.cpp , jave.cpp , jpartdif.cpp , bfilter.cpp , bmodcol.cpp , jsubtomo.cpp , jviews.cpp , bmodcomp.cpp , radon.cpp , radonrecon.cpp , b3v.cpp , balpha.cpp , bcc.cpp , bfilwidth.cpp , bmodedit.cpp , bmodel.cpp , bfind.cpp , bmodmap.cpp , bmodmask.cpp , bclass.cpp , bfix.cpp , bmodsel.cpp , bmodsym.cpp , bflat.cpp , bmodview.cpp , bmol.cpp , bampweigh.cpp , bcolour.cpp , bflood.cpp , bmoledit.cpp , bmolhel.cpp , bftr.cpp , bmolsym.cpp , bmontage.cpp , bcomplex.cpp , bgex.cpp , bmonte.cpp , bmultifit.cpp , bgraphseg.cpp , bmultimask.cpp , bmultislice.cpp , badd.cpp , bar.cpp , bconvert.cpp , bhead.cpp , bnad.cpp , bnorm.cpp , bheight.cpp , bop.cpp , borient.cpp , bcormut.cpp , bhelcross.cpp , bparam.cpp , bpart.cpp , bhelix.cpp , bpartmulti.cpp , bpartsel.cpp , bass.cpp , bcrystal.cpp , bhisto.cpp , bpatch.cpp , bpath.cpp , bico.cpp , bphase.cpp , bpick.cpp , bctf.cpp , bimg.cpp , bplane.cpp , bpoly.cpp , bint.cpp , bproject.cpp , bradial.cpp , baddmask.cpp , bbackproj.cpp , bcyl.cpp , bkernel.cpp , bradsec.cpp , brandom.cpp , blevel.cpp , brecadd.cpp , brecmod.cpp , bdelta.cpp , blocfilt.cpp , breconstruct.cpp , brefine.cpp , blocres.cpp , bresolve.cpp , bscale.cpp , bbif.cpp , bdens.cpp , bmapdist.cpp , bsegment.cpp , bseq.cpp , bmark.cpp , bseqaln.cpp , bseries.cpp , bdif.cpp , bmask.cpp , bsf.cpp , bshell.cpp , bmaskmod.cpp , bsim.cpp , bspiral.cpp
- MAP : mg_tags.h
- MAP_BACK_RWEIGHT : mg_tags.h
- MAP_FOM : mg_tags.h
- MAP_ID : mg_tags.h
- MAP_MAGNIFICATION : mg_tags.h
- MAP_MODEL : mg_tags.h
- MAP_ORIGIN_X : mg_tags.h
- MAP_ORIGIN_Y : mg_tags.h
- MAP_ORIGIN_Z : mg_tags.h
- MAP_POWERSPEC_FILE : mg_tags.h
- MAP_RECONSTRUCTION : mg_tags.h
- MAP_REFERENCE : mg_tags.h
- MAP_SCALE_X : mg_tags.h
- MAP_SCALE_Y : mg_tags.h
- MAP_SCALE_Z : mg_tags.h
- MAP_SELECT : mg_tags.h
- map_shift() : sin_gal.cpp
- MAP_SIZE_X : mg_tags.h
- MAP_SIZE_Y : mg_tags.h
- MAP_SIZE_Z : mg_tags.h
- MAP_SYMMETRY : mg_tags.h
- MAP_TRANSFORM_FILE : mg_tags.h
- MAP_VIEW_ANGLE : mg_tags.h
- MAP_VIEW_X : mg_tags.h
- MAP_VIEW_Y : mg_tags.h
- MAP_VIEW_Z : mg_tags.h
- MAP_VOXEL_SIZE : mg_tags.h
- MARKER : mg_tags.h
- marker_accept() : tcltk_bmarker.cpp
- marker_center() : tcltk_bmarker.cpp
- marker_clear_selection_flag() : tcltk_bmarker.cpp
- marker_compare() : marker.h , marker.cpp
- marker_count() : tcltk_bmarker.cpp
- marker_create() : tcltk_bmarker.cpp
- marker_delete() : tcltk_bmarker.cpp
- marker_edge() : tcltk_bmarker.cpp
- MARKER_ERROR_X : mg_tags.h
- MARKER_ERROR_Y : mg_tags.h
- MARKER_ERROR_Z : mg_tags.h
- marker_extract() : tcltk_bmarker.cpp
- marker_extract_gold() : mg_extract.h , mg_extract.cpp
- marker_find() : tcltk_bmarker.cpp
- marker_find_matrix() : marker.h , marker.cpp
- marker_find_transform() : marker.h , marker.cpp
- MARKER_FOM : mg_tags.h
- marker_fom() : mg_tomo_track.cpp , tcltk_bmarker.cpp
- marker_fom_maximum() : tcltk_bmarker.cpp
- marker_from_starblock() : rwmgSTAR.cpp
- marker_generate_from_seed() : tcltk_bmarker.cpp
- marker_get_selection_flag() : tcltk_bmarker.cpp
- MARKER_ID : mg_tags.h
- marker_ids() : tcltk_bmarker.cpp
- MARKER_IMAGE : mg_tags.h
- marker_list() : tcltk_bmarker.cpp
- marker_location() : tcltk_bmarker.cpp
- marker_move() : tcltk_bmarker.cpp
- marker_plane() : marker.h , marker.cpp
- MARKER_RADIUS : mg_tags.h
- marker_refine() : mg_tomo_track.cpp
- MARKER_RESIDUAL : mg_tags.h
- marker_residual() : tcltk_bmarker.cpp
- marker_scale() : marker.h , marker.cpp
- MARKER_SELECT : mg_tags.h
- marker_select() : tcltk_bmarker.cpp
- marker_select_rectangle() : tcltk_bmarker.cpp
- marker_set_at_radius() : marker.h , marker.cpp
- marker_set_selection_flag() : tcltk_bmarker.cpp
- marker_sets_to_bild() : marker.h , marker.cpp
- marker_shift() : marker.h , marker.cpp
- marker_show() : mg_tomo_track.cpp
- marker_snap() : tcltk_bmarker.cpp
- marker_stats() : marker.h , marker.cpp
- marker_to_starblock() : rwmgSTAR.cpp
- marker_transform() : marker.h , marker.cpp
- MARKER_X : mg_tags.h
- MARKER_Y : mg_tags.h
- MARKER_Z : mg_tags.h
- markerAcceptModelLocation() : bshow_tomo.tcl
- markerCenter() : bshow_tomo.tcl
- markerClearSelectFlag() : bshow_tomo.tcl
- markerCreateSelect() : bshow_tomo.tcl
- markerDelete() : bshow_tomo.tcl
- markerDeleteAll() : bshow_tomo.tcl
- markerDeleteID() : bshow_tomo.tcl
- markerDeleteSelected() : bshow_tomo.tcl
- markerDeleteSelectedAll() : bshow_tomo.tcl
- markerDraw() : bshow_tomo.tcl
- markerDrawAll() : bshow_tomo.tcl
- markerExtract() : bshow_tomo.tcl
- markerFind() : bshow_tomo.tcl
- markerGenerate() : bshow_tomo.tcl
- markerMove() : bshow_tomo.tcl
- markerNextFOM() : bshow_tomo.tcl
- markerNextResidual() : bshow_tomo.tcl
- markerRefine() : bshow_tomo.tcl
- markerRenumber() : bshow_tomo.tcl
- markers_add() : marker.h , marker.cpp
- markers_center() : marker.h , marker.cpp
- markers_copy() : marker.h , marker.cpp
- markers_copy_selected() : marker.h , marker.cpp
- markers_delete_non_selected() : marker.h , marker.cpp
- markers_find_rottrans() : marker.h , marker.cpp
- markers_findOneToOne() : marker.cpp
- markers_limit() : marker.h , marker.cpp
- markers_map_and_find_transform() : marker.h , marker.cpp
- markers_renumber() : marker.h , marker.cpp
- markers_RoughMatch() : marker.cpp
- markers_sort_by_id() : marker.h , marker.cpp
- markers_sort_rel_distance() : marker.cpp
- markerSelect() : bshow_tomo.tcl
- markerSelectAppend() : bshow_tomo.tcl
- markerSetSelectFlag() : bshow_tomo.tcl
- markerSetSelection() : bshow_tomo.tcl
- markerSnap() : bshow_tomo.tcl
- markerTable() : bshow_tomo.tcl
- markerTrack() : bshow_tomo.tcl
- markerTransfer() : bshow_tomo.tcl
- mask_filament_particles() : mg_extract.cpp
- MASK_RAD : rwSUPRIM.h
- matrix3_show_hp() : Matrix3.h , Matrix3.cpp
- matrix_calc_dist_fit() : matrix_util.h , matrix_util.cpp
- matrix_find_cutoff_for_number() : matrix_util.h , matrix_util.cpp
- matrix_find_linear_sequence() : matrix_util.h , matrix_util.cpp
- matrix_log_1_R() : matrix_util.h , matrix_util.cpp
- matrix_normalize() : matrix_util.h , matrix_util.cpp
- matrix_permute() : matrix_util.h , matrix_util.cpp
- MAX_FORMAT_SIZE : Bstring.h
- MAX_GET_LEN : utilities.cpp
- MAX_RANK : fft.h
- MAX_TAG_LEN : options.cpp
- MAXLINELEN : utilities.h
- MAXLINK : rwmodel.h
- MAXOP : bar.cpp
- MAXRAD : molecule_to_map.cpp
- MAXREG : rwSUPRIM.h
- MAXRES : rwresprop.h
- MAXSCAT : molecule_to_map.cpp
- MAXSEQLEN : rwmolecule.h
- MAXSID : molecule_to_map.cpp
- mcm_molecule_groups() : mol_monte.h , mol_monte.cpp
- mcm_molecule_list() : mol_monte.h , mol_monte.cpp
- md_angle() : mol_bonds.h , mol_bonds.cpp
- md_angle_list_set_parameters() : mol_bonds.h , mol_bonds.cpp
- md_angular_forces() : mol_md.h , mol_md.cpp
- md_bond_forces() : mol_md.h , mol_md.cpp
- md_bond_list_set_parameters() : mol_bonds.h , mol_bonds.cpp
- md_bondlist_get_top() : mol_bonds.cpp
- md_calculate_deviations() : mol_bonds.h , mol_bonds.cpp
- md_calculate_parameters() : mol_param.h , mol_param.cpp
- md_calculate_radial_deviation() : mol_bonds.h , mol_bonds.cpp
- md_find_angle() : mol_bonds.h , mol_bonds.cpp
- md_find_angle_type() : mol_bonds.h , mol_bonds.cpp
- md_find_bond_length() : mol_bonds.h , mol_bonds.cpp
- md_find_bond_type() : mol_bonds.h , mol_bonds.cpp
- md_generate_angle_list() : mol_bonds.h , mol_bonds.cpp
- md_generate_bond_list() : mol_bonds.h , mol_bonds.cpp
- md_generate_bond_list_with_valence() : mol_bonds.h , mol_bonds.cpp
- md_generate_molecular_bond_list() : mol_bonds.h , mol_bonds.cpp
- md_init() : rwmd.h , rwmd.cpp
- md_init_with_types() : rwmd.h , rwmd.cpp
- md_kill() : rwmd.h , rwmd.cpp
- md_leapfrog() : mol_md.h , mol_md.cpp
- md_nonbonded_forces() : mol_md.h , mol_md.cpp
- md_point_force() : mol_md.h , mol_md.cpp
- md_show_angles() : mol_bonds.h , mol_bonds.cpp
- md_show_bond_stats() : mol_bonds.h , mol_bonds.cpp
- md_show_bond_types() : mol_bonds.h , mol_bonds.cpp
- md_show_bonds() : mol_bonds.h , mol_bonds.cpp
- md_zero_forces() : mol_md.h , mol_md.cpp
- mean_to_0() : radon_util.cpp , radon_util.h
- Measure() : bshow_select.tcl
- memory_check() : utilities.h , utilities.cpp
- merge() : sin_gal.cpp
- MFFSIZE : rwMFF.h
- mg_3D_location_from_marker() : mg_tomography.cpp
- mg_align_coordinates() : mg_align.h , mg_align.cpp
- mg_align_feature_extraction() : mg_align.h , mg_align.cpp
- mg_align_frames() : mg_align.cpp
- mg_align_micrographs() : mg_align.h , mg_align.cpp
- mg_align_series() : mg_align.cpp
- mg_apply_transform() : mg_align.h , mg_align.cpp
- mg_classify() : mg_class.h , mg_class.cpp
- mg_composite_particle() : mg_tomography.h , mg_tomography.cpp
- mg_ctf() : mg_ctf.cpp
- mg_ctf_prepare() : mg_ctf.cpp
- mg_erase_markers() : mg_tomography.h , mg_tomography.cpp
- mg_extract_orient_particles() : mg_pick.cpp
- mg_extract_show_layer_lines() : mg_helix.h , mg_helix.cpp
- mg_fft_write() : mg_tomo_rec.h , mg_tomo_rec.cpp
- mg_find_markers() : mg_tomography.h , mg_tomography.cpp
- mg_find_part_centers() : mg_particles.h , mg_particles.cpp
- mg_find_tilt_axis() : mg_tomo_track.cpp
- mg_generate_layer_lines() : mg_helix.h , mg_helix.cpp
- mg_generate_reflections() : mg_xtal.h , mg_xtal.cpp
- mg_img_scale() : mg_img_proc.cpp
- mg_location_from_3D_model() : mg_tomography.h , mg_tomography.cpp
- mg_marker_init() : mg_tomography.h , mg_tomography.cpp
- mg_marker_shift() : mg_tomo_track.h , mg_tomo_track.cpp
- mg_marker_update() : mg_tomography.h , mg_tomography.cpp
- mg_marker_z_search() : mg_tomo_track.cpp
- mg_marker_z_search_one() : mg_tomo_track.cpp
- mg_merge_focal_series() : mg_align.h , mg_align.cpp
- mg_part_links() : mg_processing.h , mg_processing.cpp
- mg_particle_merge_series() : mg_merge.h , mg_merge.cpp
- mg_particle_unmerge() : mg_merge.h , mg_merge.cpp
- mg_pick_background() : mg_pick.cpp
- mg_pick_particles() : mg_pick.cpp
- mg_ps_name() : mg_ctf.cpp
- mg_reconstruct_align() : mg_align.cpp
- mg_refine_markers() : mg_tomo_track.h , mg_tomo_track.cpp
- mg_refine_orientations() : mg_refine.h , mg_refine.cpp
- mg_replace_parameters() : bmgtransfer.cpp
- mg_reset_model() : mg_tomography.h , mg_tomography.cpp
- mg_star_update_tags() : rwmgSTAR.h , rwmgSTAR.cpp
- mg_tomo_rec_prepare() : mg_tomo_rec.cpp
- mg_tomo_reconstruct() : mg_align.cpp
- mg_tomo_res_reconstruct() : mg_tomo_resol.cpp
- mg_tomo_residuals() : mg_tomography.h , mg_tomography.cpp
- mg_tomo_resolution() : mg_tomo_resol.h , mg_tomo_resol.cpp
- mg_unitcell_vectors() : mg_xtal.h , mg_xtal.cpp
- mg_update_model() : mg_tomography.cpp
- mg_write_average_frames() : mg_align.cpp
- mg_z_matrix_update() : mg_tomo_track.cpp
- MgRelion : file_util.h
- Micrograph : file_util.h
- MICROGRAPH : mg_tags.h
- micrograph_add() : mg_processing.h , mg_processing.cpp
- MICROGRAPH_BAD : mg_tags.h
- MICROGRAPH_BAD_RADIUS : mg_tags.h
- MICROGRAPH_BAD_X : mg_tags.h
- MICROGRAPH_BAD_Y : mg_tags.h
- MICROGRAPH_BAD_Z : mg_tags.h
- MICROGRAPH_BOX_RADIUS : mg_tags.h
- MICROGRAPH_BOX_RADIUS_X : mg_tags.h
- MICROGRAPH_BOX_RADIUS_Y : mg_tags.h
- MICROGRAPH_BOX_RADIUS_Z : mg_tags.h
- micrograph_clear_extraneous_areas() : mg_tomography.h , mg_tomography.cpp
- micrograph_copy() : mg_processing.h , mg_processing.cpp
- micrograph_count() : mg_processing.h , mg_processing.cpp
- micrograph_count_particles() : mg_processing.h , mg_processing.cpp
- MICROGRAPH_CTF_ALPHA : mg_tags.h
- MICROGRAPH_CTF_AMP_CONT : mg_tags.h
- MICROGRAPH_CTF_AST_ANG : mg_tags.h
- MICROGRAPH_CTF_BASELINE : mg_tags.h
- MICROGRAPH_CTF_CC : mg_tags.h
- MICROGRAPH_CTF_CS : mg_tags.h
- MICROGRAPH_CTF_DE : mg_tags.h
- MICROGRAPH_CTF_DEF_AVG : mg_tags.h
- MICROGRAPH_CTF_DEF_DEV : mg_tags.h
- MICROGRAPH_CTF_DEF_MAX : mg_tags.h
- MICROGRAPH_CTF_DEF_MIN : mg_tags.h
- MICROGRAPH_CTF_ENVELOPE : mg_tags.h
- MICROGRAPH_CTF_ZERO : mg_tags.h
- MICROGRAPH_DOSE : mg_tags.h
- micrograph_extract_filaments() : mg_extract.h , mg_extract.cpp
- micrograph_extract_gold() : mg_extract.h , mg_extract.cpp
- micrograph_extract_particles() : mg_extract.h , mg_extract.cpp
- MICROGRAPH_FIELD_ID : mg_tags.h
- MICROGRAPH_FILAMENT_FILE : mg_tags.h
- MICROGRAPH_FILAMENT_WIDTH : mg_tags.h
- micrograph_filaments_to_particles() : mg_extract.h , mg_extract.cpp
- MICROGRAPH_FILE : mg_tags.h
- MICROGRAPH_FILNODE_RADIUS : mg_tags.h
- MICROGRAPH_FOM : mg_tags.h
- MICROGRAPH_FRAME : mg_tags.h
- MICROGRAPH_FRAME_FOM : mg_tags.h
- MICROGRAPH_FRAME_SELECT : mg_tags.h
- MICROGRAPH_FRAME_SHIFT_X : mg_tags.h
- MICROGRAPH_FRAME_SHIFT_Y : mg_tags.h
- MICROGRAPH_FRAMES_FILE : mg_tags.h
- micrograph_from_starblock() : rwmgSTAR.cpp
- micrograph_get_nominal_origin() : mg_img_proc.h , mg_img_proc.cpp
- micrograph_get_size() : mg_img_proc.h , mg_img_proc.cpp
- MICROGRAPH_HELIX_ANGLE : mg_tags.h
- MICROGRAPH_HELIX_AXIS : mg_tags.h
- MICROGRAPH_HELIX_RADIUS : mg_tags.h
- MICROGRAPH_HELIX_RISE : mg_tags.h
- MICROGRAPH_HVEC_X : mg_tags.h
- MICROGRAPH_HVEC_Y : mg_tags.h
- MICROGRAPH_HVEC_Z : mg_tags.h
- MICROGRAPH_ID : mg_tags.h
- micrograph_kill() : mg_processing.h , mg_processing.cpp
- MICROGRAPH_KVEC_X : mg_tags.h
- MICROGRAPH_KVEC_Y : mg_tags.h
- MICROGRAPH_KVEC_Z : mg_tags.h
- MICROGRAPH_LEVEL_ANGLE : mg_tags.h
- MICROGRAPH_LVEC_X : mg_tags.h
- MICROGRAPH_LVEC_Y : mg_tags.h
- MICROGRAPH_LVEC_Z : mg_tags.h
- MICROGRAPH_MAGNIFICATION : mg_tags.h
- MICROGRAPH_MARKER_ERROR_X : mg_tags.h
- MICROGRAPH_MARKER_ERROR_Y : mg_tags.h
- MICROGRAPH_MARKER_ERROR_Z : mg_tags.h
- MICROGRAPH_MARKER_FOM : mg_tags.h
- MICROGRAPH_MARKER_ID : mg_tags.h
- MICROGRAPH_MARKER_RADIUS : mg_tags.h
- MICROGRAPH_MARKER_X : mg_tags.h
- MICROGRAPH_MARKER_Y : mg_tags.h
- MICROGRAPH_MARKER_Z : mg_tags.h
- MICROGRAPH_MATRIX_1_1 : mg_tags.h
- MICROGRAPH_MATRIX_1_2 : mg_tags.h
- MICROGRAPH_MATRIX_1_3 : mg_tags.h
- MICROGRAPH_MATRIX_2_1 : mg_tags.h
- MICROGRAPH_MATRIX_2_2 : mg_tags.h
- MICROGRAPH_MATRIX_2_3 : mg_tags.h
- MICROGRAPH_MATRIX_3_1 : mg_tags.h
- MICROGRAPH_MATRIX_3_2 : mg_tags.h
- MICROGRAPH_MATRIX_3_3 : mg_tags.h
- MICROGRAPH_NUMBER : mg_tags.h
- MICROGRAPH_ORIGIN_X : mg_tags.h
- MICROGRAPH_ORIGIN_Y : mg_tags.h
- MICROGRAPH_ORIGIN_Z : mg_tags.h
- MICROGRAPH_PARTICLE_FILE : mg_tags.h
- MICROGRAPH_PIXEL : mg_tags.h
- MICROGRAPH_POWERSPEC_FILE : mg_tags.h
- MICROGRAPH_ROT_ANGLE : mg_tags.h
- MICROGRAPH_SAMPLING : mg_tags.h
- MICROGRAPH_SCALE_X : mg_tags.h
- MICROGRAPH_SCALE_Y : mg_tags.h
- MICROGRAPH_SCALE_Z : mg_tags.h
- MICROGRAPH_SELECT : mg_tags.h
- micrograph_set_part_links() : mg_processing.h , mg_processing.cpp
- MICROGRAPH_TILT_ANGLE : mg_tags.h
- MICROGRAPH_TILT_AXIS : mg_tags.h
- micrograph_to_relionblock() : rwmgRELION.cpp
- micrograph_to_starblock() : rwmgSTAR.cpp
- MICROGRAPH_TRANSFORM_FILE : mg_tags.h
- MICROGRAPH_UNITS : mg_tags.h
- micrograph_update() : mg_processing.h , mg_processing.cpp
- MICROGRAPH_VIEW_ANGLE : mg_tags.h
- MICROGRAPH_VIEW_X : mg_tags.h
- MICROGRAPH_VIEW_Y : mg_tags.h
- MICROGRAPH_VIEW_Z : mg_tags.h
- MICROGRAPH_VOLTAGE : mg_tags.h
- micrographItem() : bshow_param.tcl
- MIN2PI : utilities.h
- MIN_SIZE_FOR_THREADING : utilities.h
- mixrig() : fft_tool.cpp , fft_tool.h
- MODE : mg_processing.h
- MODE_CCC : mg_processing.h
- MODE_PPS : mg_processing.h
- MODE_SCC : mg_processing.h
- MODEL : model_tags.h
- Model : file_util.h , bshow_model.tcl
- model : bshow.cpp , tcltk_bmodel.cpp
- model_add() : rwmodel.h , rwmodel.cpp
- model_add_component() : model_create.h , model_create.cpp
- model_add_path() : model_path.cpp
- model_add_shell() : model_shell.h , model_shell.cpp
- model_add_type_by_filename() : rwmodel.h , rwmodel.cpp
- model_add_type_by_id() : rwmodel.h , rwmodel.cpp
- model_add_type_by_id_and_filename() : rwmodel.h , rwmodel.cpp
- model_adjacency_matrix() : model_compare.h , model_compare.cpp
- model_adjacent_pentagons() : model_poly_spiral.cpp
- model_adjacent_pentagons_in_first_polygons() : model_poly_spiral.cpp
- model_adjust_for_binning() : model_transform.h , model_transform.cpp
- model_adjust_shell_to_guide() : model_shell.h , model_shell.cpp
- model_adjust_to_guide() : model_plane.cpp
- model_align_to_guide() : model_transform.h , model_transform.cpp
- model_angle_energy() : model_mechanics.h , model_mechanics.cpp
- model_apply_point_group() : model_symmetry.h , model_symmetry.cpp
- model_assemble() : model_util.h , model_util.cpp
- model_associate() : rwmodel.h , rwmodel.cpp
- model_associate_mass() : rwmodel.h , rwmodel.cpp
- model_average_component_density() : model_extract_build.h , model_extract_build.cpp
- model_average_components() : model_util.h , model_util.cpp
- model_average_link_density() : model_extract_build.h , model_extract_build.cpp
- model_average_linklength() : model_mechanics.cpp
- model_average_overlapped_components() : model_select.h , model_select.cpp
- model_build_from_component_density() : model_extract_build.h , model_extract_build.cpp
- model_build_from_link_density() : model_extract_build.h , model_extract_build.cpp
- model_calculate_deviations() : model_mechanics.h , model_mechanics.cpp
- model_calculate_local_views() : model_views.h , model_views.cpp
- model_calculate_views() : model_views.h , model_views.cpp
- model_catenate_maps() : model_map.h , model_map.cpp
- model_center() : model_transform.h , model_transform.cpp
- model_center_of_mass() : model_util.h , model_util.cpp
- model_center_of_mass_nu() : model_util.cpp
- model_change_type() : rwmodel.h , rwmodel.cpp
- model_check() : rwmodel.h , rwmodel.cpp
- model_check_path() : model_path.cpp
- model_color_by_density() : model_color.h , model_color.cpp
- model_color_by_fom() : model_color.h , model_color.cpp
- model_color_by_order() : model_color.h , model_color.cpp
- model_color_chiral_vertices() : model_color.h , model_color.cpp
- model_color_curvature() : model_color.h , model_color.cpp
- model_color_selected() : model_color.h , model_color.cpp
- model_color_selected_types() : model_color.h , model_color.cpp
- model_color_uniformly() : model_color.h , model_color.cpp
- model_compare() : model_compare.h , model_compare.cpp
- model_component_count() : rwmodel.h , rwmodel.cpp
- model_component_number_difference() : model_compare.h , model_compare.cpp
- model_component_symmetry() : model_map.h , model_map.cpp
- model_components_to_shells() : model_shell.h , model_shell.cpp
- model_composite_map() : model_select.cpp
- model_consolidate() : model_compare.h , model_compare.cpp
- model_copy() : rwmodel.h , rwmodel.cpp
- model_count_component_types() : rwmodel.h , rwmodel.cpp
- model_create_circle() : model_create.h , model_create.cpp
- model_create_cylinder() : model_create.h , model_create.cpp
- model_create_dodecahedron() : model_create.h , model_create.cpp
- model_create_ellipse() : model_create.h , model_create.cpp
- model_create_ellipsoid() : model_create.h , model_create.cpp
- model_create_fibonacci_sphere() : model_create.h , model_create.cpp
- model_create_hull_mask() : model_mask.h , model_mask.cpp
- model_create_icosahedron() : model_create.h , model_create.cpp
- model_create_level_mask() : model_mask.h , model_mask.cpp
- model_create_mask() : model_mask.h , model_mask.cpp
- model_create_plane() : model_create.h , model_create.cpp
- model_create_shell() : model_create.h , model_create.cpp
- model_create_shell_mask() : model_mask.h , model_mask.cpp
- model_create_spindle() : model_create.h , model_create.cpp
- model_curvature() : model_shell.h , model_shell.cpp
- model_delete() : model_select.h , model_select.cpp
- model_delete_comp_type() : model_select.h , model_select.cpp
- model_delete_non_selected() : model_select.h , model_select.cpp
- model_delete_overlapped_components() : model_select.h , model_select.cpp
- model_delta_create_cylinder() : model_poly_delta.h , model_poly_delta.cpp
- model_delta_create_tube() : model_poly_delta.h , model_poly_delta.cpp
- model_delta_create_tube_old() : model_poly_delta.cpp
- model_distance_energy() : model_mechanics.cpp , model_mechanics.h
- model_distance_matrix() : model_compare.h , model_compare.cpp
- model_distance_to_guide() : model_plane.cpp
- model_ellipsoidicity() : model_shell.h , model_shell.cpp
- model_extended_vertex_types() : model_poly.h , model_poly.cpp
- model_extract_component_densities() : model_extract_build.h , model_extract_build.cpp
- model_find_asymmetric_unit() : model_symmetry.h , model_symmetry.cpp
- model_find_overlap() : model_select.h , model_select.cpp
- model_find_transform() : model_transform.h , model_transform.cpp
- model_find_views() : model_views.h , model_views.cpp
- model_fit_plane() : model_plane.h , model_plane.cpp
- MODEL_FOM : model_tags.h
- model_fom_deselect() : model_select.cpp , model_select.h
- model_fom_histogram() : model_select.h , model_select.cpp
- model_fom_max_fraction_deselect() : model_select.cpp , model_select.h
- model_fom_ranking() : model_select.h , model_select.cpp
- model_from_densities() : model_multifit.cpp , model_multifit.h
- model_from_densities_for_view() : model_multifit.h , model_multifit.cpp
- model_from_images() : model_map.h , model_map.cpp
- model_from_markers() : marker.h , marker.cpp
- model_from_multilevel_mask() : model_mask.cpp , model_mask.h
- model_from_peaks() : model_multifit.h , model_multifit.cpp
- model_generate_com() : model_util.cpp , model_util.h
- model_generate_from_plane_guide() : model_plane.h , model_plane.cpp
- model_get_type() : rwmodel.cpp , rwmodel.h
- model_gyration_radius() : model_util.h , model_util.cpp
- model_hamiltonian_cycle() : model_path.h , model_path.cpp
- MODEL_HAND : model_tags.h
- model_helix() : model_create.h , model_create.cpp
- MODEL_ID : model_tags.h
- model_init() : rwmodel.cpp , rwmodel.h , rwmodel.cpp
- model_inside_outside() : model_shell.h , model_shell.cpp
- model_inside_outside_fast() : model_shell.cpp
- model_invert_selection() : model_select.h , model_select.cpp
- model_invert_views() : model_views.h , model_views.cpp
- model_kill() : rwmodel.h , rwmodel.cpp
- model_lennard_jones_energy() : model_mechanics.h , model_mechanics.cpp
- model_link_add() : model_path.cpp
- model_link_energy() : model_mechanics.cpp , model_mechanics.h , model_mechanics.cpp
- model_link_list_generate() : model_links.h , model_links.cpp
- model_link_list_kill() : rwmodel.cpp , rwmodel.h
- model_linked_submodel() : model_links.cpp
- model_links_minimum_valency() : model_links.h , model_links.cpp
- model_list() : model_util.h , model_util.cpp
- model_list_comp() : model_util.h , model_util.cpp
- model_list_copy() : rwmodel.h , rwmodel.cpp
- model_map_energy() : model_mechanics.cpp , model_mechanics.h , model_mechanics.cpp
- MODEL_MAP_FILENAME : model_tags.h
- MODEL_MAP_NUMBER : model_tags.h
- model_mass() : model_util.h , model_util.cpp
- model_mass_all() : model_util.h , model_util.cpp
- model_maxnum_components() : model_compare.h , model_compare.cpp
- model_mechanics() : model_mechanics.h , model_mechanics.cpp
- model_merge() : model_util.h , model_util.cpp
- model_minimize() : model_mechanics.h , model_mechanics.cpp
- model_morse_energy() : model_mechanics.h , model_mechanics.cpp
- model_neighbor_distance_energy() : model_mechanics.h , model_mechanics.cpp
- model_neighbor_plane_energy() : model_mechanics.h , model_mechanics.cpp
- model_neighbor_reciprocity() : model_neighbors.h , model_neighbors.cpp
- model_number_connected_clusters() : model_poly.cpp
- model_number_ids() : model_util.h , model_util.cpp
- model_occupancy() : model_occupancy.cpp , model_occupancy.h
- model_occupancy_distribution() : model_occupancy.h , model_occupancy.cpp
- model_overlap_matrix() : model_select.cpp
- model_param_display() : rwmodel_param.h , rwmodel_param.cpp
- model_param_generate() : rwmodel_param.h , rwmodel_param.cpp
- model_param_init() : rwmodel_param.h , rwmodel_param.cpp
- model_param_kill() : rwmodel_param.h , rwmodel_param.cpp
- model_param_read() : rwmodel_param.h , rwmodel_param.cpp
- model_param_set_type_indices() : rwmodel_param.h , rwmodel_param.cpp
- model_param_write() : rwmodel_param.h , rwmodel_param.cpp
- model_platonic() : model_create.h , model_create.cpp
- model_point_force() : model_mechanics.h , model_mechanics.cpp
- model_poly_analyze() : model_poly.h , model_poly.cpp
- model_poly_angles() : model_poly.h , model_poly.cpp
- model_poly_compare() : model_poly.h , model_poly.cpp
- model_poly_dual() : model_poly.h , model_poly.cpp
- model_poly_eigenvalues() : model_poly.h , model_poly.cpp
- model_poly_energy() : model_poly.h , model_poly.cpp
- model_poly_faces() : model_poly.h , model_poly.cpp
- model_poly_find_symmetry() : model_poly.h , model_poly.cpp
- model_poly_gen_3part() : model_poly_spiral.h , model_poly_spiral.cpp
- model_poly_gen_coffin() : model_poly_spiral.h , model_poly_spiral.cpp
- model_poly_gen_coffin_jiggle() : model_poly_spiral.h , model_poly_spiral.cpp
- model_poly_gen_coffin_loose() : model_poly_spiral.h , model_poly_spiral.cpp
- model_poly_gen_cone() : model_poly_spiral.h , model_poly_spiral.cpp
- model_poly_gen_lozenge() : model_poly_spiral.h , model_poly_spiral.cpp
- model_poly_gen_move_pentagons() : model_poly_spiral.h , model_poly_spiral.cpp
- model_poly_gen_permutations() : model_poly_spiral.h , model_poly_spiral.cpp
- model_poly_gen_sequence() : model_poly_spiral.cpp , model_poly_spiral.h , model_poly_spiral.cpp
- model_poly_generate() : model_poly.h , model_poly.cpp
- model_poly_hand() : model_poly.h , model_poly.cpp
- model_poly_links() : model_poly.h , model_poly.cpp
- model_poly_pentagon_adjacency() : model_poly.h , model_poly.cpp
- model_poly_planarity() : model_poly.h , model_poly.cpp
- model_poly_regularity() : model_poly.h , model_poly.cpp
- model_poly_sphere_coor() : model_poly.h , model_poly.cpp
- model_poly_spiral() : model_poly_spiral.h , model_poly_spiral.cpp
- model_poly_spiral_regularize() : model_poly_spiral.cpp
- model_polygon_angle_energy() : model_mechanics.h , model_mechanics.cpp
- model_polygon_energy() : model_mechanics.h , model_mechanics.cpp
- model_polygon_plane_energy() : model_mechanics.cpp , model_mechanics.h
- model_polyhedron_check() : model_poly_spiral.h , model_poly_spiral.cpp
- model_polyhedron_guide_energy() : model_mechanics.cpp , model_mechanics.h
- model_principal_axes() : model_util.h , model_util.cpp
- model_processing() : tcltk_bmodel.cpp , tcltk_bmodel.h
- model_prune_fit() : model_select.h , model_select.cpp
- model_prune_fom() : model_select.h , model_select.cpp
- model_prune_large() : model_select.h , model_select.cpp
- model_prune_similar() : model_select.h , model_select.cpp
- model_prune_simple() : model_select.h , model_select.cpp
- model_radial_distribution() : model_util.cpp , model_util.h
- model_radial_energy() : model_mechanics.h , model_mechanics.cpp
- model_random() : model_create.cpp , model_create.h , model_create.cpp
- model_random_gaussian() : model_create.cpp , model_create.h
- model_random_shell() : model_create.cpp , model_create.h , model_create.cpp , model_create.h
- model_reduce_linked() : model_links.h , model_links.cpp
- model_refine_comp_for_occupancy() : model_occupancy.h , model_occupancy.cpp
- model_refine_components() : model_extract_build.cpp , model_extract_build.h
- model_refine_link_positions() : model_extract_build.h , model_extract_build.cpp
- model_reflect() : model_transform.cpp , model_transform.h
- model_reflect_and_compare() : model_transform.h , model_transform.cpp
- model_regularize() : model_mechanics.cpp , model_mechanics.h
- model_rename_components() : model_util.h , model_util.cpp
- model_replace_components() : model_util.cpp , model_util.h
- model_reset_selection() : model_select.h , model_select.cpp
- model_rotate() : model_transform.h , model_transform.cpp , model_transform.h , model_transform.cpp , model_transform.h
- model_rotate_and_compare() : model_transform.cpp , model_transform.h
- model_scale() : model_transform.h , model_transform.cpp
- model_select() : model_select.h , model_select.cpp
- MODEL_SELECT : model_tags.h
- model_select() : model_select.h
- model_select_all() : model_select.h , model_select.cpp
- model_select_closed() : model_select.cpp , model_select.h
- model_select_first() : model_select.h , model_select.cpp
- model_select_fullerene() : model_select.h , model_select.cpp
- model_select_in_mask() : model_select.h , model_select.cpp
- model_select_non_fullerene() : model_select.h , model_select.cpp
- model_select_number_of_components() : model_select.h , model_select.cpp
- model_select_polygons() : model_select.cpp , model_select.h
- model_select_sets() : model_select.h , model_select.cpp
- model_select_unknowns() : model_select.h , model_select.cpp
- model_select_valence() : model_select.h , model_select.cpp
- model_selection_stats() : model_select.h , model_select.cpp
- model_set_component_radius() : rwmodel.h , rwmodel.cpp
- model_set_comptype_filenames() : rwmodel.h , rwmodel.cpp
- model_set_density() : rwmodel.h , rwmodel.cpp
- model_set_fom() : rwmodel.h , rwmodel.cpp
- model_set_link_length() : model_links.h , model_links.cpp
- model_set_link_radius() : model_links.cpp , model_links.h
- model_set_map_filenames() : rwmodel.h , rwmodel.cpp
- model_set_neighbors() : model_neighbors.h , model_neighbors.cpp , model_neighbors.h
- model_set_type() : rwmodel.h , rwmodel.cpp
- model_set_views() : model_views.h , model_views.cpp
- model_setup_links() : model_links.h , model_links.cpp
- model_shell_fit() : model_map.h , model_map.cpp
- model_shell_power_spectrum() : model_map.h , model_map.cpp
- model_shell_radial_profile() : model_map.h , model_map.cpp
- model_shift() : model_transform.h , model_transform.cpp
- model_shortest_path() : model_path.h , model_path.cpp
- model_soft_sphere_energy() : model_mechanics.h , model_mechanics.cpp
- model_sphericity() : model_shell.h , model_shell.cpp
- model_spherize() : model_create.cpp
- model_subdivide() : model_create.cpp
- MODEL_SYM : model_tags.h
- model_symmetrize() : model_symmetry.h , model_symmetry.cpp
- model_symmetry_related() : model_symmetry.cpp , model_symmetry.h
- model_to_bild_neighbor_planes() : rwmodel_bild.cpp , rwmodel_bild.h
- model_to_bild_orientations() : rwmodel_bild.cpp , rwmodel_bild.h
- model_to_bild_polygons() : rwmodel_bild.cpp , rwmodel_bild.h
- model_to_bild_view_polygons() : rwmodel_bild.cpp , rwmodel_bild.h
- model_to_bild_view_sphere() : rwmodel_bild.h , rwmodel_bild.cpp
- MODEL_TYPE : model_tags.h
- model_type_from_selection() : model_select.h , model_select.cpp
- model_unset_selection() : model_select.h , model_select.cpp
- model_update_centers_of_mass() : model_util.h , model_util.cpp
- model_update_comment() : rwmodel.h , rwmodel.cpp
- model_verlet() : model_mechanics.h , model_mechanics.cpp
- model_vertex_types() : model_poly.h , model_poly.cpp
- model_vertex_types_in_first_polygons() : model_poly_spiral.cpp
- model_view_directions() : model_views.h , model_views.cpp
- model_wiener_index() : model_path.cpp , model_path.h
- model_zero_forces() : model_mechanics.cpp , model_mechanics.h
- models_apply_point_group() : model_symmetry.cpp , model_symmetry.h
- models_consensus() : model_compare.cpp , model_compare.h
- models_from_particles() : bmod2part.cpp
- models_process() : model_util.h , model_util.cpp , model_util.h , model_util.cpp
- models_radius_deselect() : model_select.h , model_select.cpp
- models_reflect() : model_transform.h , model_transform.cpp
- models_scale() : model_transform.h , model_transform.cpp
- models_shift() : model_transform.h , model_transform.cpp
- modifyImage() : bshow_image.tcl
- modifyImage_and_DestroyWindow() : bshow_image.tcl
- mol_bond_list_generate() : rwmolecule.h , rwmolecule.cpp
- mol_calculate_rmsd() : mol_compare.h , mol_compare.cpp
- mol_center_of_mass() : mol_util.h , mol_util.cpp
- mol_coor_rotate() : mol_transform.h , mol_transform.cpp
- mol_coor_shift() : mol_transform.cpp , mol_transform.h
- mol_coor_transform() : mol_transform.h , mol_transform.cpp
- mol_copy_and_add_to_molgroup() : rwmolecule.h , rwmolecule.cpp
- mol_count_atoms() : rwmolecule.cpp , rwmolecule.h
- mol_count_residues() : rwmolecule.cpp , rwmolecule.h
- mol_find_alpha_orientation() : mol_alpha.cpp , mol_alpha.h
- mol_find_transformation() : mol_compare.cpp , mol_compare.h
- mol_generate_alpha_helix() : mol_alpha.h , mol_alpha.cpp
- mol_generate_one_water() : mol_water.cpp , mol_water.h
- mol_map_correlation() : mol_map_energy.h , mol_map_energy.cpp
- mol_map_energy() : mol_map_energy.h , mol_map_energy.cpp
- mol_principal_axes() : mol_util.cpp , mol_util.h
- mol_rotate() : mol_transform.cpp
- mol_rotate_from_view() : mol_transform.cpp , mol_transform.h
- mol_rotate_to_view() : mol_transform.h , mol_transform.cpp
- mol_shift_to_center_of_mass() : mol_transform.cpp , mol_transform.h
- mol_show_center_of_mass() : mol_util.cpp , mol_util.h
- mol_stats() : rwmolecule.h , rwmolecule.cpp
- mol_to_image() : molecule_to_map.cpp
- mol_to_structure_factors() : molecule_to_map.cpp
- Molecule : file_util.h
- molecule_add() : rwmolecule.h , rwmolecule.cpp , rwmolecule.h
- molecule_copy() : rwmolecule.h , rwmolecule.cpp
- MOLECULE_FILENAME : mol_tags.h
- MOLECULE_FOM : mol_tags.h
- molecule_get_masses() : rwmolecule.cpp , rwmolecule.h
- molecule_kill() : rwmolecule.h , rwmolecule.cpp
- MOLECULE_LENGTH : mol_tags.h
- MOLECULE_MAP_FILE : mol_tags.h
- MOLECULE_MAP_NUMBER : mol_tags.h
- MOLECULE_NAME : mol_tags.h
- MOLECULE_SELECT : mol_tags.h
- MOLECULE_SEQUENCE : mol_tags.h
- molecule_update_comment() : rwmolecule.cpp , rwmolecule.h
- MOLECULE_VIEW_ANGLE : mol_tags.h
- MOLECULE_VIEW_X : mol_tags.h
- MOLECULE_VIEW_Y : mol_tags.h
- MOLECULE_VIEW_Z : mol_tags.h
- MOLECULE_X : mol_tags.h
- MOLECULE_Y : mol_tags.h
- MOLECULE_Z : mol_tags.h
- molecules_to_molgroups() : rwmolecule.cpp , rwmolecule.h
- molgroup_add_disulfides() : mol_edit.cpp , mol_edit.h
- molgroup_apply_matrices_from_pdb() : mol_symmetry.h , mol_symmetry.cpp
- molgroup_apply_point_group() : mol_symmetry.cpp , mol_symmetry.h
- molgroup_apply_symmetry_from_pdb() : mol_symmetry.cpp , mol_symmetry.h
- molgroup_atom_mesh_lists() : mol_util.cpp , mol_util.h
- molgroup_atom_overlap() : mol_monte.h , mol_monte.cpp
- molgroup_atom_renumber() : mol_util.cpp , mol_util.h
- molgroup_atoms_selected() : mol_select.cpp , mol_select.h
- molgroup_Bfactors() : mol_util.h , mol_util.cpp
- molgroup_bond_fit_map_energy() : mol_map_energy.cpp , mol_map_energy.h
- molgroup_bond_list_copy() : rwmolecule.cpp , rwmolecule.h
- molgroup_bond_list_generate() : rwmolecule.h , rwmolecule.cpp
- molgroup_bond_pseudo_atoms() : mol_edit.cpp , mol_edit.h
- molgroup_calc_brute_rmsd() : mol_compare.cpp , mol_compare.h
- molgroup_calc_water_rdf() : mol_water.cpp , mol_water.h
- molgroup_calculate_rmsd() : mol_compare.h , mol_compare.cpp
- molgroup_calculate_weight() : mol_util.h , mol_util.cpp
- molgroup_center_of_mass() : mol_util.cpp , mol_util.h
- molgroup_composition() : mol_util.cpp , mol_util.h
- molgroup_consolidate_alpha() : mol_alpha.h , mol_alpha.cpp
- molgroup_consolidate_gaps() : rwmolecule.cpp , rwmolecule.h
- molgroup_coor_invert() : mol_transform.h , mol_transform.cpp
- molgroup_coor_reset_occupancy() : mol_util.cpp , mol_util.h
- molgroup_coor_rotate() : mol_transform.h , mol_transform.cpp
- molgroup_coor_select() : mol_select.cpp , mol_select.h
- molgroup_coor_select_ring() : mol_select.h , mol_select.cpp
- molgroup_coor_shift() : mol_transform.cpp , mol_transform.h
- molgroup_coor_shift_PBC() : mol_transform.h , mol_transform.cpp
- molgroup_coor_shift_rotate_PBC() : mol_transform.cpp , mol_transform.h
- molgroup_coor_transform() : mol_transform.cpp , mol_transform.h
- molgroup_copy() : rwmolecule.cpp , rwmolecule.h
- molgroup_count_atoms() : rwmolecule.cpp , rwmolecule.h
- molgroup_count_molecules() : rwmolecule.cpp , rwmolecule.h
- molgroup_count_residues() : rwmolecule.h , rwmolecule.cpp
- molgroup_delete_deselected_atoms() : mol_edit.h , mol_edit.cpp
- molgroup_delete_deselected_molecules() : mol_edit.h , mol_edit.cpp
- molgroup_density() : mol_util.h , mol_util.cpp
- molgroup_deselect_all() : mol_select.cpp , mol_select.h
- molgroup_find_helical_axes() : mol_alpha.h , mol_alpha.cpp
- molgroup_find_standard_view() : mol_symmetry.cpp , mol_symmetry.h
- molgroup_find_transformation() : mol_compare.cpp , mol_compare.h
- molgroup_from_molgroup_list() : rwmolecule.h , rwmolecule.cpp
- molgroup_generate_alpha_helix() : mol_alpha.h , mol_alpha.cpp
- molgroup_generate_crystal() : mol_symmetry.cpp , mol_symmetry.h
- molgroup_generate_helix() : mol_symmetry.cpp , mol_symmetry.h
- molgroup_generate_masked_grid_list() : mol_monte.cpp , mol_monte.h
- molgroup_generate_orientation_list() : mol_monte.h , mol_monte.cpp , mol_monte.h
- molgroup_generate_random_water() : mol_water.cpp , mol_water.h
- molgroup_generate_regular_water() : mol_water.h , mol_water.cpp
- molgroup_get_atom_types() : mol_param.cpp , mol_param.h
- molgroup_init() : rwmolecule.h , rwmolecule.cpp
- molgroup_insert() : mol_edit.h , mol_edit.cpp
- molgroup_kill() : rwmolecule.cpp , rwmolecule.h
- molgroup_list_copy() : rwmolecule.cpp , rwmolecule.h
- molgroup_list_kill() : rwmolecule.cpp , rwmolecule.h
- molgroup_list_write() : rwmolecule.cpp , rwmolecule.h
- molgroup_map_correlation() : mol_map_energy.h , mol_map_energy.cpp
- molgroup_map_energy() : mol_map_energy.h , mol_map_energy.cpp
- molgroup_move_atoms_down_energy() : mol_monte.cpp , mol_monte.h
- molgroup_orient_to_standard_view() : mol_symmetry.h , mol_symmetry.cpp
- molgroup_pack_in_periodic_box() : mol_transform.cpp , mol_transform.h
- molgroup_place_at_coordinates() : mol_transform.h , mol_transform.cpp
- molgroup_principal_axes() : mol_util.h , mol_util.cpp
- molgroup_print_sequence() : mol_util.h , mol_util.cpp
- molgroup_prune_molecules() : mol_edit.h , mol_edit.cpp
- molgroup_prune_overlapping_atoms() : mol_edit.cpp , mol_edit.h
- molgroup_radial_density() : mol_util.h , mol_util.cpp
- molgroup_randomize() : mol_edit.h , mol_edit.cpp
- molgroup_remove_hydrogens() : mol_edit.cpp , mol_edit.h
- molgroup_remove_overlapping_atoms() : mol_edit.cpp , mol_edit.h
- molgroup_rename() : mol_util.cpp , mol_util.h
- molgroup_residue_renumber() : mol_util.cpp , mol_util.h
- molgroup_resolve_pbc() : mol_transform.h , mol_transform.cpp
- molgroup_rigid_body_transform() : mol_monte.cpp , mol_monte.h
- molgroup_rotate() : mol_transform.cpp
- molgroup_rotate_and_compare() : mol_compare.h , mol_compare.cpp
- molgroup_rotate_from_view() : mol_transform.h , mol_transform.cpp
- molgroup_rotate_to_view() : mol_transform.h , mol_transform.cpp
- molgroup_select() : mol_select.h , mol_select.cpp
- molgroup_select_all() : mol_select.h , mol_select.cpp
- molgroup_select_chains() : mol_select.h , mol_select.cpp
- molgroup_selected_center_of_mass() : mol_util.h , mol_util.cpp
- molgroup_sequence_check() : rwmolecule.cpp
- molgroup_set_alpha_helix() : mol_alpha.cpp , mol_alpha.h
- molgroup_set_atom_types_to_elements() : mol_edit.h , mol_edit.cpp
- molgroup_set_box_to_map_boundaries() : mol_monte.cpp , mol_monte.h
- molgroup_set_radius() : mol_util.cpp , mol_util.h
- molgroup_shift_to_center_of_mass() : mol_transform.h , mol_transform.cpp
- molgroup_show_center_of_mass() : mol_util.h , mol_util.cpp
- molgroup_split_into_slices() : mol_edit.h , mol_edit.cpp
- molgroup_stats() : rwmolecule.h , rwmolecule.cpp
- molgroup_symmetry_B() : mol_symmetry.cpp , mol_symmetry.h
- molgroup_symmetry_RMSD() : mol_symmetry.h , mol_symmetry.cpp
- molgroup_test_if_within_box() : mol_monte.cpp , mol_monte.h
- molgroup_trim() : bmoledit.cpp
- molgroup_untangle_groups() : mol_edit.cpp , mol_edit.h
- molgroup_untangle_molecules() : mol_edit.h , mol_edit.cpp
- molgroup_volume() : mol_util.h , mol_util.cpp
- molgroup_write_into_grid() : model_util.cpp
- mont : tcltk_bimage.cpp
- Montage() : bshow_image.tcl
- montageImage() : bshow_image.tcl
- montageSelect() : bshow_image.tcl
- monte_atom_fit_energy() : mol_monte.cpp , mol_monte.h
- monte_bond_fit_energy() : mol_monte.h , mol_monte.cpp
- monte_carlo_metropolis() : mol_monte.cpp , mol_monte.h
- monte_rigid_body_fit_energy() : mol_monte.h , mol_monte.cpp
- month : rwSPE.cpp , rwPIF.cpp , rwSPIDER.cpp , rwimg.cpp
- mouseMoved() : bshow_misc.tcl
- mousePressed() : bshow_misc.tcl
- mouseReleased() : bshow_misc.tcl
- move_pentagons() : model_poly_spiral.cpp
- moveCanvasTo() : bshow_tomo.tcl
- moving_average() : moving_average.h , moving_average.cpp
- moving_average_complex() : moving_average.cpp , moving_average.h
- moving_polynomial() : moving_average.cpp , moving_average.h
- MRCSIZE : rwMRC.h
- MULTI_FILE : mg_processing.h