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<section xmlns="http://docbook.org/ns/docbook" version="5.0" xmlns:xlink="http://www.w3.org/1999/xlink" xml:id="_btomres_8cpp">
<title>/Users/bernard/b20/bsoft/src/btomres.cpp File Reference</title>
<indexterm><primary>/Users/bernard/b20/bsoft/src/btomres.cpp</primary></indexterm>
<para>

<para>Program to determine the resolution of a tilt series. </para>
 
</para>
<programlisting>#include &quot;mg_tomo_resol.h&quot;
#include &quot;mg_tomo_rec.h&quot;
#include &quot;rwmg.h&quot;
#include &quot;utilities.h&quot;
#include &quot;options.h&quot;
#include &quot;timer.h&quot;
</programlisting><simplesect>
    <title>Functions    </title>
        <itemizedlist>
            <listitem><para>int <link linkend="_btomres_8cpp_1a3c04138a5bfe5d72780bb7e82a18e627">main</link> (int argc, char **argv)</para>
</listitem>
        </itemizedlist>
</simplesect>
<simplesect>
    <title>Variables    </title>
        <itemizedlist>
            <listitem><para>int <link linkend="_btomres_8cpp_1a0b2caeb4b6f130be43e5a2f0267dd453">verbose</link></para>
</listitem>
            <listitem><para>const char * <link linkend="_btomres_8cpp_1a4de0ad4c7190962494815c0fa7f948df">use</link> []</para>
</listitem>
        </itemizedlist>
</simplesect>
<section>
<title>Detailed Description</title>

<para>Program to determine the resolution of a tilt series. </para>

<para><formalpara><title>Author: </title>

<para>Bernard Heymann </para>
</formalpara>
<formalpara><title>Date: </title>

<para>Created: 20031205 </para>

<para>Modified: 20190221 </para>
</formalpara>
</para>
</section>
<section>
<title>Function Documentation</title>
<anchor xml:id="_btomres_8cpp_1a3c04138a5bfe5d72780bb7e82a18e627"/>    <section>
    <title>main()</title>
<indexterm><primary>main</primary><secondary>btomres.cpp</secondary></indexterm>
<indexterm><primary>btomres.cpp</primary><secondary>main</secondary></indexterm>
<para><computeroutput>int main (int argc, char ** argv)</computeroutput></para><para>
Definition at line 48 of file btomres.cpp.</para>
</section>
</section>
<section>
<title>Variable Documentation</title>
<anchor xml:id="_btomres_8cpp_1a4de0ad4c7190962494815c0fa7f948df"/>    <section>
    <title>use</title>
<indexterm><primary>use</primary><secondary>btomres.cpp</secondary></indexterm>
<indexterm><primary>btomres.cpp</primary><secondary>use</secondary></indexterm>
<para><computeroutput>const char* use[]</computeroutput></para><emphasis role="strong">Initial value:</emphasis><programlisting>=&#32;{
<emphasis role="stringliteral">&quot;&#32;&quot;</emphasis>,
<emphasis role="stringliteral">&quot;Usage:&#32;btomres&#32;[options]&#32;input.star&#32;[input2.star]&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-------------------------------------------------&quot;</emphasis>,
<emphasis role="stringliteral">&quot;Program&#32;to&#32;determine&#32;the&#32;resolution&#32;of&#32;a&#32;tilt&#32;series.&quot;</emphasis>,
<emphasis role="stringliteral">&quot;&#32;&quot;</emphasis>,
<emphasis role="stringliteral">&quot;Parameters:&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-verbose&#32;7&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;Verbosity&#32;of&#32;output.&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-datatype&#32;u&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;Force&#32;writing&#32;of&#32;a&#32;new&#32;data&#32;type.&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-sampling&#32;1.5,1.5,1.5&#32;&#32;&#32;&#32;Sampling&#32;of&#32;input&#32;images&#32;(A/pixel;&#32;a&#32;single&#32;value&#32;can&#32;be&#32;given).&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-resolution&#32;20&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;Resolution&#32;limit&#32;(angstrom,&#32;default&#32;Nyquist).&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-ratio&#32;2.5&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;Radial&#32;sampling&#32;to&#32;Cartesian&#32;sampling&#32;ratio&#32;(default&#32;1).&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-scale&#32;1.2&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;Scale&#32;or&#32;magnification&#32;of&#32;reconstruction&#32;compared&#32;to&#32;original&#32;images&#32;(default&#32;1).&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-size&#32;100,120,90&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;Size&#32;of&#32;reconstruction&#32;(default&#32;from&#32;images).&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-cutoff&#32;0.3&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;Resolution&#32;cutoff&#32;for&#32;FRC&#32;(default&#32;0.5).&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-micrograph&#32;56&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;Micrograph&#32;number&#32;to&#32;use&#32;for&#32;the&#32;resolution&#32;test&#32;(first&#32;=&#32;0).&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-fast&#32;10&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;Fast&#32;mode,&#32;only&#32;use&#32;micrographs&#32;within&#32;the&#32;given&#32;angle&#32;from&#32;the&#32;selected&#32;one&#32;(default&#32;all).&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-CTF&#32;flip&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;Apply&#32;CTF&#32;correction&#32;to&#32;images&#32;before&#32;reconstruction&#32;(default&#32;not).&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-wiener&#32;0.15&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;Wiener&#32;factor&#32;for&#32;CTF&#32;correction&#32;(default&#32;0.2).&quot;</emphasis>,
<emphasis role="stringliteral">&quot;&#32;&quot;</emphasis>,
<emphasis role="stringliteral">&quot;Output:&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-output&#32;file.star&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;Output&#32;parameter&#32;file&#32;name.&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-reconstruction&#32;file.mrc&#32;Output&#32;2D&#32;reconstruction&#32;file&#32;name.&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-Postscript&#32;file.ps&#32;&#32;&#32;&#32;&#32;&#32;Postscript&#32;output&#32;filename.&quot;</emphasis>,
<emphasis role="stringliteral">&quot;&#32;&quot;</emphasis>,
NULL
}
</programlisting><para>
Definition at line 20 of file btomres.cpp.</para>
    </section><anchor xml:id="_btomres_8cpp_1a0b2caeb4b6f130be43e5a2f0267dd453"/>    <section>
    <title>verbose</title>
<indexterm><primary>verbose</primary><secondary>btomres.cpp</secondary></indexterm>
<indexterm><primary>btomres.cpp</primary><secondary>verbose</secondary></indexterm>
<para><computeroutput>int verbose</computeroutput></para></section>
</section>
</section>
