/Users/bernard/b20/bsoft/include/mol_tags.h(3)

NAME
/Users/bernard/b20/bsoft/include/mol_tags.h - All STAR file format tags for molecules and molecular parameters.

SYNOPSIS

  Macros
#define CELL_A 'cell.length_a'
#define CELL_B 'cell.length_b'
#define CELL_C 'cell.length_c'
#define CELL_ALPHA 'cell.angle_alpha'
#define CELL_BETA 'cell.angle_beta'
#define CELL_GAMMA 'cell.angle_gamma'
#define ATOM_TYPE_SYMBOL 'atom_type.symbol'
#define ATOM_TYPE_NUMBER 'atom_type.atom_number'
#define ATOM_TYPE_OXIDATION 'atom_type.oxidation_number'
#define ATOM_TYPE_MASS 'atom_type.mass'
#define ATOM_TYPE_RADIUS_BOND 'atom_type.radius_bond'
#define ATOM_TYPE_RADIUS_VDW 'atom_type.radius_contact'
#define ATOM_TYPE_SCAT_A1 'atom_type.scat_Cromer_Mann_a1'
#define ATOM_TYPE_SCAT_A2 'atom_type.scat_Cromer_Mann_a2'
#define ATOM_TYPE_SCAT_A3 'atom_type.scat_Cromer_Mann_a3'
#define ATOM_TYPE_SCAT_A4 'atom_type.scat_Cromer_Mann_a4'
#define ATOM_TYPE_SCAT_A5 'atom_type.scat_Cromer_Mann_a5'
#define ATOM_TYPE_SCAT_B1 'atom_type.scat_Cromer_Mann_b1'
#define ATOM_TYPE_SCAT_B2 'atom_type.scat_Cromer_Mann_b2'
#define ATOM_TYPE_SCAT_B3 'atom_type.scat_Cromer_Mann_b3'
#define ATOM_TYPE_SCAT_B4 'atom_type.scat_Cromer_Mann_b4'
#define ATOM_TYPE_SCAT_B5 'atom_type.scat_Cromer_Mann_b5'
#define ATOM_TYPE_SCAT_C 'atom_type.scat_Cromer_Mann_c'
#define BOND_RULE_SYMBOL 'bond_rule.symbol'
#define BOND_RULE_BONDS 'bond_rule.bonds'
#define BOND_TYPE_SYMBOL1 'bond_type.symbol1'
#define BOND_TYPE_SYMBOL2 'bond_type.symbol2'
#define BOND_TYPE_LENGTH 'bond_type.length'
#define BOND_TYPE_VDWDIST 'bond_type.VdW_distance'
#define ANGLE_TYPE_SYMBOL1 'angle_type.symbol1'
#define ANGLE_TYPE_SYMBOL2 'angle_type.symbol2'
#define ANGLE_TYPE_SYMBOL3 'angle_type.symbol3'
#define ANGLE_TYPE_ANGLE 'angle_type.angle'
#define ATOM_PDB 'atom_site.group_PDB'
#define ATOM_RESNUMBER 'atom_site.label_seq_id'
#define ATOM_RESINSERT 'atom_site.pdbx_PDB_ins_code'
#define ATOM_NUMBER 'atom_site.id'
#define ATOM_SEGMENT 'atom_site.auth_asym_id'
#define ATOM_LABEL 'atom_site.group_PDB'
#define ATOM_SYMBOL 'atom_site.type_symbol'
#define ATOM_TOPTYPE 'atom_site.label_atom_id'
#define ATOM_RESIDUE 'atom_site.label_comp_id'
#define ATOM_CHAIN 'atom_site.label_asym_id'
#define ATOM_ENTITY 'atom_site.label_entity_id'
#define ATOM_X 'atom_site.Cartn_x'
#define ATOM_Y 'atom_site.Cartn_y'
#define ATOM_Z 'atom_site.Cartn_z'
#define ATOM_FRACT_X 'atom_site.fract_x'
#define ATOM_FRACT_Y 'atom_site.fract_y'
#define ATOM_FRACT_Z 'atom_site.fract_z'
#define ATOM_OCCUPANCY 'atom_site.occupancy'
#define ATOM_BFACTOR 'atom_site.B_iso_or_equiv'
#define ATOM_CHARGE 'atom_site.charge'
#define ATOM_FOOTNOTE_ID 'atom_site.footnote_id'
#define RESPROP_CODON 'residue_property.codon'
#define RESPROP_CODE1 'residue_property.code1'
#define RESPROP_CODE3 'residue_property.code3'
#define RESPROP_MASS 'residue_property.mass'
#define RESPROP_VOLUME 'residue_property.volume'
#define RESPROP_EXTENSION 'residue_property.extension'
#define RESPROP_EXTSTDEV 'residue_property.extstdev'
#define RESPROP_HYDROPHOBICITY 'residue_property.hydrophobicity'
#define RESPROP_CHARGE 'residue_property.charge'
#define RESPROP_H 'residue_property.H'
#define RESPROP_C 'residue_property.C'
#define RESPROP_N 'residue_property.N'
#define RESPROP_O 'residue_property.O'
#define RESPROP_S 'residue_property.S'
#define RESMATRIX1_CODE1 'residue1_matrix.code1'
#define RESMATRIX2_CODE1 'residue2_matrix.code1'
#define RESMATRIX_SUBSTITUTION 'residue_matrix.substitution'
#define RESCOIL_CODE1 'residue_coil.code1'
#define RESCOIL_POS_A 'residue_coil.position_a'
#define RESCOIL_POS_B 'residue_coil.position_b'
#define RESCOIL_POS_C 'residue_coil.position_c'
#define RESCOIL_POS_D 'residue_coil.position_d'
#define RESCOIL_POS_E 'residue_coil.position_e'
#define RESCOIL_POS_F 'residue_coil.position_f'
#define RESCOIL_POS_G 'residue_coil.position_g'
#define MOLECULE_NAME 'molecule.name'
#define MOLECULE_LENGTH 'molecule.length'
#define MOLECULE_SEQUENCE 'molecule.sequence'
#define MOLECULE_FILENAME 'molecule.file_name'
#define MOLECULE_MAP_FILE 'molecule.map_file_name'
#define MOLECULE_MAP_NUMBER 'molecule.map_number'
#define MOLECULE_X 'molecule.x'
#define MOLECULE_Y 'molecule.y'
#define MOLECULE_Z 'molecule.z'
#define MOLECULE_VIEW_X 'molecule.view_x'
#define MOLECULE_VIEW_Y 'molecule.view_y'
#define MOLECULE_VIEW_Z 'molecule.view_z'
#define MOLECULE_VIEW_ANGLE 'molecule.view_angle'
#define MOLECULE_FOM 'molecule.fom'
#define MOLECULE_SELECT 'molecule.select'

Detailed Description

All STAR file format tags for molecules and molecular parameters.

Author:
    Bernard Heymann

Date:
    Created: 20000419

    Modified: 20190603

Definition in file mol_tags.h.

Macro Definition Documentation

  #define ANGLE_TYPE_ANGLE 'angle_type.angle'

Definition at line 54 of file mol_tags.h.

  #define ANGLE_TYPE_SYMBOL1 'angle_type.symbol1'

Definition at line 51 of file mol_tags.h.

  #define ANGLE_TYPE_SYMBOL2 'angle_type.symbol2'

Definition at line 52 of file mol_tags.h.

  #define ANGLE_TYPE_SYMBOL3 'angle_type.symbol3'

Definition at line 53 of file mol_tags.h.

  #define ATOM_BFACTOR 'atom_site.B_iso_or_equiv'

Definition at line 75 of file mol_tags.h.

  #define ATOM_CHAIN 'atom_site.label_asym_id'

Definition at line 66 of file mol_tags.h.

  #define ATOM_CHARGE 'atom_site.charge'

Definition at line 76 of file mol_tags.h.

  #define ATOM_ENTITY 'atom_site.label_entity_id'

Definition at line 67 of file mol_tags.h.

  #define ATOM_FOOTNOTE_ID 'atom_site.footnote_id'

Definition at line 77 of file mol_tags.h.

  #define ATOM_FRACT_X 'atom_site.fract_x'

Definition at line 71 of file mol_tags.h.

  #define ATOM_FRACT_Y 'atom_site.fract_y'

Definition at line 72 of file mol_tags.h.

  #define ATOM_FRACT_Z 'atom_site.fract_z'

Definition at line 73 of file mol_tags.h.

  #define ATOM_LABEL 'atom_site.group_PDB'

Definition at line 62 of file mol_tags.h.

  #define ATOM_NUMBER 'atom_site.id'

Definition at line 60 of file mol_tags.h.

  #define ATOM_OCCUPANCY 'atom_site.occupancy'

Definition at line 74 of file mol_tags.h.

  #define ATOM_PDB 'atom_site.group_PDB'

Definition at line 57 of file mol_tags.h.

  #define ATOM_RESIDUE 'atom_site.label_comp_id'

Definition at line 65 of file mol_tags.h.

  #define ATOM_RESINSERT 'atom_site.pdbx_PDB_ins_code'

Definition at line 59 of file mol_tags.h.

  #define ATOM_RESNUMBER 'atom_site.label_seq_id'

Definition at line 58 of file mol_tags.h.

  #define ATOM_SEGMENT 'atom_site.auth_asym_id'

Definition at line 61 of file mol_tags.h.

  #define ATOM_SYMBOL 'atom_site.type_symbol'

Definition at line 63 of file mol_tags.h.

  #define ATOM_TOPTYPE 'atom_site.label_atom_id'

Definition at line 64 of file mol_tags.h.

  #define ATOM_TYPE_MASS 'atom_type.mass'

Definition at line 25 of file mol_tags.h.

  #define ATOM_TYPE_NUMBER 'atom_type.atom_number'

Definition at line 23 of file mol_tags.h.

  #define ATOM_TYPE_OXIDATION 'atom_type.oxidation_number'

Definition at line 24 of file mol_tags.h.

  #define ATOM_TYPE_RADIUS_BOND 'atom_type.radius_bond'

Definition at line 26 of file mol_tags.h.

  #define ATOM_TYPE_RADIUS_VDW 'atom_type.radius_contact'

Definition at line 27 of file mol_tags.h.

  #define ATOM_TYPE_SCAT_A1 'atom_type.scat_Cromer_Mann_a1'

Definition at line 28 of file mol_tags.h.

  #define ATOM_TYPE_SCAT_A2 'atom_type.scat_Cromer_Mann_a2'

Definition at line 29 of file mol_tags.h.

  #define ATOM_TYPE_SCAT_A3 'atom_type.scat_Cromer_Mann_a3'

Definition at line 30 of file mol_tags.h.

  #define ATOM_TYPE_SCAT_A4 'atom_type.scat_Cromer_Mann_a4'

Definition at line 31 of file mol_tags.h.

  #define ATOM_TYPE_SCAT_A5 'atom_type.scat_Cromer_Mann_a5'

Definition at line 32 of file mol_tags.h.

  #define ATOM_TYPE_SCAT_B1 'atom_type.scat_Cromer_Mann_b1'

Definition at line 33 of file mol_tags.h.

  #define ATOM_TYPE_SCAT_B2 'atom_type.scat_Cromer_Mann_b2'

Definition at line 34 of file mol_tags.h.

  #define ATOM_TYPE_SCAT_B3 'atom_type.scat_Cromer_Mann_b3'

Definition at line 35 of file mol_tags.h.

  #define ATOM_TYPE_SCAT_B4 'atom_type.scat_Cromer_Mann_b4'

Definition at line 36 of file mol_tags.h.

  #define ATOM_TYPE_SCAT_B5 'atom_type.scat_Cromer_Mann_b5'

Definition at line 37 of file mol_tags.h.

  #define ATOM_TYPE_SCAT_C 'atom_type.scat_Cromer_Mann_c'

Definition at line 38 of file mol_tags.h.

  #define ATOM_TYPE_SYMBOL 'atom_type.symbol'

Definition at line 22 of file mol_tags.h.

  #define ATOM_X 'atom_site.Cartn_x'

Definition at line 68 of file mol_tags.h.

  #define ATOM_Y 'atom_site.Cartn_y'

Definition at line 69 of file mol_tags.h.

  #define ATOM_Z 'atom_site.Cartn_z'

Definition at line 70 of file mol_tags.h.

  #define BOND_RULE_BONDS 'bond_rule.bonds'

Definition at line 42 of file mol_tags.h.

  #define BOND_RULE_SYMBOL 'bond_rule.symbol'

Definition at line 41 of file mol_tags.h.

  #define BOND_TYPE_LENGTH 'bond_type.length'

Definition at line 47 of file mol_tags.h.

  #define BOND_TYPE_SYMBOL1 'bond_type.symbol1'

Definition at line 45 of file mol_tags.h.

  #define BOND_TYPE_SYMBOL2 'bond_type.symbol2'

Definition at line 46 of file mol_tags.h.

  #define BOND_TYPE_VDWDIST 'bond_type.VdW_distance'

Definition at line 48 of file mol_tags.h.

  #define CELL_A 'cell.length_a'

Definition at line 14 of file mol_tags.h.

  #define CELL_ALPHA 'cell.angle_alpha'

Definition at line 17 of file mol_tags.h.

  #define CELL_B 'cell.length_b'

Definition at line 15 of file mol_tags.h.

  #define CELL_BETA 'cell.angle_beta'

Definition at line 18 of file mol_tags.h.

  #define CELL_C 'cell.length_c'

Definition at line 16 of file mol_tags.h.

  #define CELL_GAMMA 'cell.angle_gamma'

Definition at line 19 of file mol_tags.h.

  #define MOLECULE_FILENAME 'molecule.file_name'

Definition at line 112 of file mol_tags.h.

  #define MOLECULE_FOM 'molecule.fom'

Definition at line 122 of file mol_tags.h.

  #define MOLECULE_LENGTH 'molecule.length'

Definition at line 108 of file mol_tags.h.

  #define MOLECULE_MAP_FILE 'molecule.map_file_name'

Definition at line 113 of file mol_tags.h.

  #define MOLECULE_MAP_NUMBER 'molecule.map_number'

Definition at line 114 of file mol_tags.h.

  #define MOLECULE_NAME 'molecule.name'

Definition at line 107 of file mol_tags.h.

  #define MOLECULE_SELECT 'molecule.select'

Definition at line 123 of file mol_tags.h.

  #define MOLECULE_SEQUENCE 'molecule.sequence'

Definition at line 109 of file mol_tags.h.

  #define MOLECULE_VIEW_ANGLE 'molecule.view_angle'

Definition at line 121 of file mol_tags.h.

  #define MOLECULE_VIEW_X 'molecule.view_x'

Definition at line 118 of file mol_tags.h.

  #define MOLECULE_VIEW_Y 'molecule.view_y'

Definition at line 119 of file mol_tags.h.

  #define MOLECULE_VIEW_Z 'molecule.view_z'

Definition at line 120 of file mol_tags.h.

  #define MOLECULE_X 'molecule.x'

Definition at line 115 of file mol_tags.h.

  #define MOLECULE_Y 'molecule.y'

Definition at line 116 of file mol_tags.h.

  #define MOLECULE_Z 'molecule.z'

Definition at line 117 of file mol_tags.h.

  #define RESCOIL_CODE1 'residue_coil.code1'

Definition at line 97 of file mol_tags.h.

  #define RESCOIL_POS_A 'residue_coil.position_a'

Definition at line 98 of file mol_tags.h.

  #define RESCOIL_POS_B 'residue_coil.position_b'

Definition at line 99 of file mol_tags.h.

  #define RESCOIL_POS_C 'residue_coil.position_c'

Definition at line 100 of file mol_tags.h.

  #define RESCOIL_POS_D 'residue_coil.position_d'

Definition at line 101 of file mol_tags.h.

  #define RESCOIL_POS_E 'residue_coil.position_e'

Definition at line 102 of file mol_tags.h.

  #define RESCOIL_POS_F 'residue_coil.position_f'

Definition at line 103 of file mol_tags.h.

  #define RESCOIL_POS_G 'residue_coil.position_g'

Definition at line 104 of file mol_tags.h.

  #define RESMATRIX1_CODE1 'residue1_matrix.code1'

Definition at line 94 of file mol_tags.h.

  #define RESMATRIX2_CODE1 'residue2_matrix.code1'

Definition at line 95 of file mol_tags.h.

  #define RESMATRIX_SUBSTITUTION 'residue_matrix.substitution'

Definition at line 96 of file mol_tags.h.

  #define RESPROP_C 'residue_property.C'

Definition at line 90 of file mol_tags.h.

  #define RESPROP_CHARGE 'residue_property.charge'

Definition at line 88 of file mol_tags.h.

  #define RESPROP_CODE1 'residue_property.code1'

Definition at line 81 of file mol_tags.h.

  #define RESPROP_CODE3 'residue_property.code3'

Definition at line 82 of file mol_tags.h.

  #define RESPROP_CODON 'residue_property.codon'

Definition at line 80 of file mol_tags.h.

  #define RESPROP_EXTENSION 'residue_property.extension'

Definition at line 85 of file mol_tags.h.

  #define RESPROP_EXTSTDEV 'residue_property.extstdev'

Definition at line 86 of file mol_tags.h.

  #define RESPROP_H 'residue_property.H'

Definition at line 89 of file mol_tags.h.

  #define RESPROP_HYDROPHOBICITY 'residue_property.hydrophobicity'

Definition at line 87 of file mol_tags.h.

  #define RESPROP_MASS 'residue_property.mass'

Definition at line 83 of file mol_tags.h.

  #define RESPROP_N 'residue_property.N'

Definition at line 91 of file mol_tags.h.

  #define RESPROP_O 'residue_property.O'

Definition at line 92 of file mol_tags.h.

  #define RESPROP_S 'residue_property.S'

Definition at line 93 of file mol_tags.h.

  #define RESPROP_VOLUME 'residue_property.volume'

Definition at line 84 of file mol_tags.h.

Author

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