/Users/bernard/b20/bsoft/include/mg_tags.h(3)

NAME
/Users/bernard/b20/bsoft/include/mg_tags.h - All STAR and XML file format tags for micrographs and reconstructions.

SYNOPSIS

  Macros
#define COMMENT 'comment'
#define ID 'id'
#define PROJECT 'project'
#define FIELD 'field'
#define FIELD_ID 'field.id'
#define FIELD_SELECT 'field.select'
#define FIELD_FOM 'field.fom'
#define MAP 'map.3D_reconstruction'
#define MAP_ID 'map.3D_reconstruction.id'
#define MAP_REFERENCE 'map.reference.file_name'
#define MAP_RECONSTRUCTION 'map.3D_reconstruction.file_name'
#define MAP_TRANSFORM_FILE 'map.3D_reconstruction_fourier_transform.file_name'
#define MAP_POWERSPEC_FILE 'map.3D_reconstruction_powerspectrum.file_name'
#define MAP_SIZE_X 'map.3D_reconstruction.size_x'
#define MAP_SIZE_Y 'map.3D_reconstruction.size_y'
#define MAP_SIZE_Z 'map.3D_reconstruction.size_z'
#define MAP_ORIGIN_X 'map.3D_reconstruction.origin_x'
#define MAP_ORIGIN_Y 'map.3D_reconstruction.origin_y'
#define MAP_ORIGIN_Z 'map.3D_reconstruction.origin_z'
#define MAP_SCALE_X 'map.3D_reconstruction.scale_x'
#define MAP_SCALE_Y 'map.3D_reconstruction.scale_y'
#define MAP_SCALE_Z 'map.3D_reconstruction.scale_z'
#define MAP_VOXEL_SIZE 'map.3D_reconstruction.voxel_size'
#define MAP_SELECT 'map.3D_reconstruction.select'
#define MAP_FOM 'map.3D_reconstruction.fom'
#define MAP_MAGNIFICATION 'map.magnification'
#define MAP_VIEW_X 'map.view_x'
#define MAP_VIEW_Y 'map.view_y'
#define MAP_VIEW_Z 'map.view_z'
#define MAP_VIEW_ANGLE 'map.view_angle'
#define MAP_BACK_RWEIGHT 'map.back_projection.rweight'
#define MAP_MODEL 'map.model'
#define MAP_SYMMETRY 'map.symmetry'
#define MICROGRAPH 'micrograph'
#define MICROGRAPH_FILE 'micrograph.file_name'
#define MICROGRAPH_FRAMES_FILE 'micrograph_frames.file_name'
#define MICROGRAPH_FRAME 'micrograph_frame.number'
#define MICROGRAPH_FRAME_SHIFT_X 'micrograph_frame.shift_x'
#define MICROGRAPH_FRAME_SHIFT_Y 'micrograph_frame.shift_y'
#define MICROGRAPH_FRAME_SELECT 'micrograph_frame.select'
#define MICROGRAPH_FRAME_FOM 'micrograph_frame.fom'
#define MICROGRAPH_PARTICLE_FILE 'micrograph_particle.file_name'
#define MICROGRAPH_FILAMENT_FILE 'micrograph_filament.file_name'
#define MICROGRAPH_TRANSFORM_FILE 'micrograph_fourier_transform.file_name'
#define MICROGRAPH_POWERSPEC_FILE 'micrograph_powerspectrum.file_name'
#define MICROGRAPH_ID 'micrograph.id'
#define MICROGRAPH_FIELD_ID 'micrograph.field_id'
#define MICROGRAPH_NUMBER 'micrograph.number'
#define MICROGRAPH_SELECT 'micrograph.select'
#define MICROGRAPH_FOM 'micrograph.fom'
#define MICROGRAPH_MAGNIFICATION 'micrograph.magnification'
#define MICROGRAPH_SAMPLING 'micrograph.sampling'
#define MICROGRAPH_PIXEL 'micrograph.pixel_size'
#define MICROGRAPH_UNITS 'micrograph.units'
#define MICROGRAPH_DOSE 'micrograph.electron_dose'
#define MICROGRAPH_ORIGIN_X 'micrograph.origin_x'
#define MICROGRAPH_ORIGIN_Y 'micrograph.origin_y'
#define MICROGRAPH_ORIGIN_Z 'micrograph.origin_z'
#define MICROGRAPH_SCALE_X 'micrograph.scale_x'
#define MICROGRAPH_SCALE_Y 'micrograph.scale_y'
#define MICROGRAPH_SCALE_Z 'micrograph.scale_z'
#define MICROGRAPH_TILT_AXIS 'micrograph.tilt_axis'
#define MICROGRAPH_TILT_ANGLE 'micrograph.tilt_angle'
#define MICROGRAPH_LEVEL_ANGLE 'micrograph.level_angle'
#define MICROGRAPH_ROT_ANGLE 'micrograph.rotation_angle'
#define MICROGRAPH_VIEW_X 'micrograph.view_x'
#define MICROGRAPH_VIEW_Y 'micrograph.view_y'
#define MICROGRAPH_VIEW_Z 'micrograph.view_z'
#define MICROGRAPH_VIEW_ANGLE 'micrograph.view_angle'
#define MICROGRAPH_MATRIX_1_1 'micrograph.matrix_1_1'
#define MICROGRAPH_MATRIX_1_2 'micrograph.matrix_1_2'
#define MICROGRAPH_MATRIX_1_3 'micrograph.matrix_1_3'
#define MICROGRAPH_MATRIX_2_1 'micrograph.matrix_2_1'
#define MICROGRAPH_MATRIX_2_2 'micrograph.matrix_2_2'
#define MICROGRAPH_MATRIX_2_3 'micrograph.matrix_2_3'
#define MICROGRAPH_MATRIX_3_1 'micrograph.matrix_3_1'
#define MICROGRAPH_MATRIX_3_2 'micrograph.matrix_3_2'
#define MICROGRAPH_MATRIX_3_3 'micrograph.matrix_3_3'
#define MICROGRAPH_HVEC_X 'micrograph.h_x'
#define MICROGRAPH_HVEC_Y 'micrograph.h_y'
#define MICROGRAPH_HVEC_Z 'micrograph.h_z'
#define MICROGRAPH_KVEC_X 'micrograph.k_x'
#define MICROGRAPH_KVEC_Y 'micrograph.k_y'
#define MICROGRAPH_KVEC_Z 'micrograph.k_z'
#define MICROGRAPH_LVEC_X 'micrograph.l_x'
#define MICROGRAPH_LVEC_Y 'micrograph.l_y'
#define MICROGRAPH_LVEC_Z 'micrograph.l_z'
#define MICROGRAPH_HELIX_AXIS 'micrograph.helix_axis_angle'
#define MICROGRAPH_HELIX_RISE 'micrograph.helix_subunit_rise'
#define MICROGRAPH_HELIX_ANGLE 'micrograph.helix_subunit_angle'
#define MICROGRAPH_HELIX_RADIUS 'micrograph.helix_radius'
#define MICROGRAPH_VOLTAGE 'micrograph.voltage'
#define MICROGRAPH_CTF_CS 'micrograph.ctf.Cs'
#define MICROGRAPH_CTF_CC 'micrograph.ctf.Cc'
#define MICROGRAPH_CTF_ALPHA 'micrograph.ctf.alpha'
#define MICROGRAPH_CTF_DE 'micrograph.ctf.energy_spread'
#define MICROGRAPH_CTF_AMP_CONT 'micrograph.ctf.amp_contrast'
#define MICROGRAPH_CTF_ZERO 'micrograph.ctf.first_zero'
#define MICROGRAPH_CTF_DEF_AVG 'micrograph.ctf.defocus_average'
#define MICROGRAPH_CTF_DEF_DEV 'micrograph.ctf.defocus_deviation'
#define MICROGRAPH_CTF_DEF_MIN 'micrograph.ctf.defocus_min'
#define MICROGRAPH_CTF_DEF_MAX 'micrograph.ctf.defocus_max'
#define MICROGRAPH_CTF_AST_ANG 'micrograph.ctf.astigmatism_angle'
#define MICROGRAPH_CTF_BASELINE 'micrograph.ctf.baseline'
#define MICROGRAPH_CTF_ENVELOPE 'micrograph.ctf.envelope'
#define MICROGRAPH_BOX_RADIUS 'micrograph.box_radius'
#define MICROGRAPH_BOX_RADIUS_X 'micrograph.box_radius_x'
#define MICROGRAPH_BOX_RADIUS_Y 'micrograph.box_radius_y'
#define MICROGRAPH_BOX_RADIUS_Z 'micrograph.box_radius_z'
#define MICROGRAPH_BAD 'micrograph.bad'
#define MICROGRAPH_BAD_RADIUS 'micrograph.bad_radius'
#define MICROGRAPH_BAD_X 'micrograph.bad_x'
#define MICROGRAPH_BAD_Y 'micrograph.bad_y'
#define MICROGRAPH_BAD_Z 'micrograph.bad_z'
#define MICROGRAPH_MARKER_RADIUS 'micrograph.marker_radius'
#define MICROGRAPH_MARKER_ID 'micrograph.marker_id'
#define MICROGRAPH_MARKER_X 'micrograph.marker_x'
#define MICROGRAPH_MARKER_Y 'micrograph.marker_y'
#define MICROGRAPH_MARKER_Z 'micrograph.marker_z'
#define MICROGRAPH_MARKER_ERROR_X 'micrograph.marker_error_x'
#define MICROGRAPH_MARKER_ERROR_Y 'micrograph.marker_error_y'
#define MICROGRAPH_MARKER_ERROR_Z 'micrograph.marker_error_z'
#define MICROGRAPH_MARKER_FOM 'micrograph.marker_fom'
#define MICROGRAPH_FILAMENT_WIDTH 'micrograph.filament_width'
#define MICROGRAPH_FILNODE_RADIUS 'micrograph.filament_node_radius'
#define CTF 'ctf'
#define CTF_VOLTAGE 'ctf.voltage'
#define CTF_CS 'ctf.Cs'
#define CTF_CC 'ctf.Cc'
#define CTF_ALPHA 'ctf.alpha'
#define CTF_DE 'ctf.energy_spread'
#define CTF_AMP 'ctf.amp_contrast'
#define CTF_AMP_SHIFT 'ctf.amplitude_phase_shift'
#define CTF_ZERO 'ctf.first_zero'
#define CTF_DEF_AVG 'ctf.defocus_average'
#define CTF_DEF_DEV 'ctf.defocus_deviation'
#define CTF_DEF_MIN 'ctf.defocus_min'
#define CTF_DEF_MAX 'ctf.defocus_max'
#define CTF_AST_ANG 'ctf.astigmatism_angle'
#define CTF_BASELINE 'ctf.baseline'
#define CTF_ENVELOPE 'ctf.envelope'
#define PARTICLE 'particle'
#define PARTICLE_FILE 'particle.file_name'
#define PARTICLE_NUMBER 'particle.number'
#define PARTICLE_ID 'particle.id'
#define PARTICLE_GROUP 'particle.group_id'
#define PARTICLE_MG_ID 'particle.micrograph_id'
#define PARTICLE_MG_X 'particle.micrograph_x'
#define PARTICLE_MG_Y 'particle.micrograph_y'
#define PARTICLE_MG_Z 'particle.micrograph_z'
#define PARTICLE_X 'particle.x'
#define PARTICLE_Y 'particle.y'
#define PARTICLE_Z 'particle.z'
#define PARTICLE_X_ORIGIN 'particle.x_origin'
#define PARTICLE_Y_ORIGIN 'particle.y_origin'
#define PARTICLE_Z_ORIGIN 'particle.z_origin'
#define PARTICLE_ORIGIN_X 'particle.origin_x'
#define PARTICLE_ORIGIN_Y 'particle.origin_y'
#define PARTICLE_ORIGIN_Z 'particle.origin_z'
#define PARTICLE_PSI 'particle.psi'
#define PARTICLE_THETA 'particle.theta'
#define PARTICLE_PHI 'particle.phi'
#define PARTICLE_OMEGA 'particle.omega'
#define PARTICLE_VIEW_X 'particle.view_x'
#define PARTICLE_VIEW_Y 'particle.view_y'
#define PARTICLE_VIEW_Z 'particle.view_z'
#define PARTICLE_VIEW_ANGLE 'particle.view_angle'
#define PARTICLE_MAGNIF 'particle.magnification'
#define PARTICLE_PIXEL 'particle.pixel_size'
#define PARTICLE_DEFOCUS 'particle.defocus'
#define PARTICLE_DEF_DEV 'particle.defocus_deviation'
#define PARTICLE_AST_ANG 'particle.astigmatism_angle'
#define PARTICLE_SELECT 'particle.select'
#define PARTICLE_FOM 'particle.fom'
#define PARTICLE_FOM_CV 'particle.fom_crossvalidation'
#define PARTICLE_FOM_SNR 'particle.signal_to_noise'
#define PARTICLE_FOM_AVG 'particle.fom_average'
#define PARTICLE_FOM_STD 'particle.fom_stdev'
#define PARTICLE_FOM1 'particle.fom1'
#define PARTICLE_FOM2 'particle.fom2'
#define PARTICLE_FOM3 'particle.fom3'
#define PARTICLE_FOM4 'particle.fom4'
#define PARTICLE_FOM5 'particle.fom5'
#define PARTICLE_FOM6 'particle.fom6'
#define PARTICLE_FOM7 'particle.fom7'
#define PARTICLE_FOM8 'particle.fom8'
#define PARTICLE_FOM9 'particle.fom9'
#define PARTICLE_HANDA_FOM 'particle.handa_fom'
#define PARTICLE_HANDB_FOM 'particle.handb_fom'
#define PARTICLE_CC 'particle.cc'
#define PARTICLE_CC_AVG 'particle.cc_avg'
#define PARTICLE_PFT_CC 'particle.pft_cc'
#define PARTICLE_PRJ_CC 'particle.prj_cc'
#define PARTICLE_CMP_CC 'particle.cmp_cc'
#define PARTICLE_RFACTORAB 'particle.rfactorab'
#define PARTICLE_COVERAGE 'particle.coverage'
#define PARTICLE_BOX_SIZE 'particle.box_size'
#define PARTICLE_BOX_SIZE_X 'particle.box_size_x'
#define PARTICLE_BOX_SIZE_Y 'particle.box_size_y'
#define PARTICLE_BOX_SIZE_Z 'particle.box_size_z'
#define PARTICLE_BOX_RADIUS 'particle.box_radius'
#define PARTICLE_BOX_RADIUS_X 'particle.box_radius_x'
#define PARTICLE_BOX_RADIUS_Y 'particle.box_radius_y'
#define PARTICLE_BOX_RADIUS_Z 'particle.box_radius_z'
#define PARTICLE_BAD 'particle.bad'
#define PARTICLE_BAD_RADIUS 'particle.bad_radius'
#define PARTICLE_BAD_X 'particle.bad_x'
#define PARTICLE_BAD_Y 'particle.bad_y'
#define PARTICLE_BAD_Z 'particle.bad_z'
#define CLASS_AVERAGE 'class_average'
#define FILAMENT 'filament'
#define FILAMENT_FILE 'filament.file_name'
#define FILAMENT_ID 'filament.id'
#define FILAMENT_NODE 'filament.node'
#define FILAMENT_NODE_ID 'filament.node_id'
#define FILAMENT_NODE_X 'filament.x'
#define FILAMENT_NODE_Y 'filament.y'
#define FILAMENT_NODE_Z 'filament.z'
#define FILAMENT_WIDTH 'filament.width'
#define FILNODE_RADIUS 'filament.node_radius'
#define ORIENT_ID 'orient.id'
#define ORIENT_ORIGIN_X 'orient.origin_x'
#define ORIENT_ORIGIN_Y 'orient.origin_y'
#define ORIENT_ORIGIN_Z 'orient.origin_z'
#define ORIENT_VIEW_X 'orient.view_x'
#define ORIENT_VIEW_Y 'orient.view_y'
#define ORIENT_VIEW_Z 'orient.view_z'
#define ORIENT_VIEW_ANGLE 'orient.view_angle'
#define ORIENT_FOM 'orient.fom'
#define ORIENT_SELECT 'orient.select'
#define MARKER 'marker'
#define MARKER_RADIUS 'marker.radius'
#define MARKER_ID 'marker.id'
#define MARKER_X 'marker.x'
#define MARKER_Y 'marker.y'
#define MARKER_Z 'marker.z'
#define MARKER_ERROR_X 'marker.error_x'
#define MARKER_ERROR_Y 'marker.error_y'
#define MARKER_ERROR_Z 'marker.error_z'
#define MARKER_IMAGE 'marker.image_number'
#define MARKER_RESIDUAL 'marker.residual'
#define MARKER_FOM 'marker.fom'
#define MARKER_SELECT 'marker.select'
#define REFLEX 'refln'
#define REFLEX_RADIUS 'refln.radius'
#define REFLEX_X 'refln.location_x'
#define REFLEX_Y 'refln.location_y'
#define REFLEX_Z 'refln.location_z'
#define REFLEX_H 'refln.index_h'
#define REFLEX_K 'refln.index_k'
#define REFLEX_L 'refln.index_l'
#define REFLEX_AMP 'refln.F_meas_au'
#define REFLEX_SIGAMP 'refln.F_meas_sigma_au'
#define REFLEX_PHI 'refln.phase_meas'
#define REFLEX_SIGPHI 'refln.phase_sigma'
#define REFLEX_FOM 'refln.weight'
#define REFLEX_STATUS 'refln.status'
#define LAYERLINE 'layer_line'
#define LAYERLINE_NUMBER 'layer_line.number'
#define LAYERLINE_ORDER 'layer_line.bessel_order'
#define LAYERLINE_DISTANCE 'layer_line.distance'
#define LAYERLINE_FREQ 'layer_line.frequency'
#define LAYERLINE_AMP 'layer_line.amplitude'
#define LAYERLINE_FOM 'layer_line.fom'
#define LAYERLINE_SELECT 'layer_line.select'

Detailed Description

All STAR and XML file format tags for micrographs and reconstructions.

Author:
    Bernard Heymann

Date:
    Created: 20000419

    Modified: 20191108

Definition in file mg_tags.h.

Macro Definition Documentation

  #define CLASS_AVERAGE 'class_average'

Definition at line 241 of file mg_tags.h.

  #define COMMENT 'comment'

Definition at line 21 of file mg_tags.h.

  #define CTF 'ctf'

Definition at line 153 of file mg_tags.h.

  #define CTF_ALPHA 'ctf.alpha'

Definition at line 157 of file mg_tags.h.

  #define CTF_AMP 'ctf.amp_contrast'

Definition at line 159 of file mg_tags.h.

  #define CTF_AMP_SHIFT 'ctf.amplitude_phase_shift'

Definition at line 160 of file mg_tags.h.

  #define CTF_AST_ANG 'ctf.astigmatism_angle'

Definition at line 166 of file mg_tags.h.

  #define CTF_BASELINE 'ctf.baseline'

Definition at line 167 of file mg_tags.h.

  #define CTF_CC 'ctf.Cc'

Definition at line 156 of file mg_tags.h.

  #define CTF_CS 'ctf.Cs'

Definition at line 155 of file mg_tags.h.

  #define CTF_DE 'ctf.energy_spread'

Definition at line 158 of file mg_tags.h.

  #define CTF_DEF_AVG 'ctf.defocus_average'

Definition at line 162 of file mg_tags.h.

  #define CTF_DEF_DEV 'ctf.defocus_deviation'

Definition at line 163 of file mg_tags.h.

  #define CTF_DEF_MAX 'ctf.defocus_max'

Definition at line 165 of file mg_tags.h.

  #define CTF_DEF_MIN 'ctf.defocus_min'

Definition at line 164 of file mg_tags.h.

  #define CTF_ENVELOPE 'ctf.envelope'

Definition at line 168 of file mg_tags.h.

  #define CTF_VOLTAGE 'ctf.voltage'

Definition at line 154 of file mg_tags.h.

  #define CTF_ZERO 'ctf.first_zero'

Definition at line 161 of file mg_tags.h.

  #define FIELD 'field'

Definition at line 25 of file mg_tags.h.

  #define FIELD_FOM 'field.fom'

Definition at line 28 of file mg_tags.h.

  #define FIELD_ID 'field.id'

Definition at line 26 of file mg_tags.h.

  #define FIELD_SELECT 'field.select'

Definition at line 27 of file mg_tags.h.

  #define FILAMENT 'filament'

Definition at line 244 of file mg_tags.h.

  #define FILAMENT_FILE 'filament.file_name'

Definition at line 245 of file mg_tags.h.

  #define FILAMENT_ID 'filament.id'

Definition at line 246 of file mg_tags.h.

  #define FILAMENT_NODE 'filament.node'

Definition at line 247 of file mg_tags.h.

  #define FILAMENT_NODE_ID 'filament.node_id'

Definition at line 248 of file mg_tags.h.

  #define FILAMENT_NODE_X 'filament.x'

Definition at line 249 of file mg_tags.h.

  #define FILAMENT_NODE_Y 'filament.y'

Definition at line 250 of file mg_tags.h.

  #define FILAMENT_NODE_Z 'filament.z'

Definition at line 251 of file mg_tags.h.

  #define FILAMENT_WIDTH 'filament.width'

Definition at line 252 of file mg_tags.h.

  #define FILNODE_RADIUS 'filament.node_radius'

Definition at line 253 of file mg_tags.h.

  #define ID 'id'

Definition at line 22 of file mg_tags.h.

  #define LAYERLINE 'layer_line'

Definition at line 300 of file mg_tags.h.

  #define LAYERLINE_AMP 'layer_line.amplitude'

Definition at line 305 of file mg_tags.h.

  #define LAYERLINE_DISTANCE 'layer_line.distance'

Definition at line 303 of file mg_tags.h.

  #define LAYERLINE_FOM 'layer_line.fom'

Definition at line 306 of file mg_tags.h.

  #define LAYERLINE_FREQ 'layer_line.frequency'

Definition at line 304 of file mg_tags.h.

  #define LAYERLINE_NUMBER 'layer_line.number'

Definition at line 301 of file mg_tags.h.

  #define LAYERLINE_ORDER 'layer_line.bessel_order'

Definition at line 302 of file mg_tags.h.

  #define LAYERLINE_SELECT 'layer_line.select'

Definition at line 307 of file mg_tags.h.

  #define MAP 'map.3D_reconstruction'

Definition at line 31 of file mg_tags.h.

  #define MAP_BACK_RWEIGHT 'map.back_projection.rweight'

Definition at line 54 of file mg_tags.h.

  #define MAP_FOM 'map.3D_reconstruction.fom'

Definition at line 48 of file mg_tags.h.

  #define MAP_ID 'map.3D_reconstruction.id'

Definition at line 32 of file mg_tags.h.

  #define MAP_MAGNIFICATION 'map.magnification'

Definition at line 49 of file mg_tags.h.

  #define MAP_MODEL 'map.model'

Definition at line 55 of file mg_tags.h.

  #define MAP_ORIGIN_X 'map.3D_reconstruction.origin_x'

Definition at line 40 of file mg_tags.h.

  #define MAP_ORIGIN_Y 'map.3D_reconstruction.origin_y'

Definition at line 41 of file mg_tags.h.

  #define MAP_ORIGIN_Z 'map.3D_reconstruction.origin_z'

Definition at line 42 of file mg_tags.h.

  #define MAP_POWERSPEC_FILE 'map.3D_reconstruction_powerspectrum.file_name'

Definition at line 36 of file mg_tags.h.

  #define MAP_RECONSTRUCTION 'map.3D_reconstruction.file_name'

Definition at line 34 of file mg_tags.h.

  #define MAP_REFERENCE 'map.reference.file_name'

Definition at line 33 of file mg_tags.h.

  #define MAP_SCALE_X 'map.3D_reconstruction.scale_x'

Definition at line 43 of file mg_tags.h.

  #define MAP_SCALE_Y 'map.3D_reconstruction.scale_y'

Definition at line 44 of file mg_tags.h.

  #define MAP_SCALE_Z 'map.3D_reconstruction.scale_z'

Definition at line 45 of file mg_tags.h.

  #define MAP_SELECT 'map.3D_reconstruction.select'

Definition at line 47 of file mg_tags.h.

  #define MAP_SIZE_X 'map.3D_reconstruction.size_x'

Definition at line 37 of file mg_tags.h.

  #define MAP_SIZE_Y 'map.3D_reconstruction.size_y'

Definition at line 38 of file mg_tags.h.

  #define MAP_SIZE_Z 'map.3D_reconstruction.size_z'

Definition at line 39 of file mg_tags.h.

  #define MAP_SYMMETRY 'map.symmetry'

Definition at line 56 of file mg_tags.h.

  #define MAP_TRANSFORM_FILE 'map.3D_reconstruction_fourier_transform.file_name'

Definition at line 35 of file mg_tags.h.

  #define MAP_VIEW_ANGLE 'map.view_angle'

Definition at line 53 of file mg_tags.h.

  #define MAP_VIEW_X 'map.view_x'

Definition at line 50 of file mg_tags.h.

  #define MAP_VIEW_Y 'map.view_y'

Definition at line 51 of file mg_tags.h.

  #define MAP_VIEW_Z 'map.view_z'

Definition at line 52 of file mg_tags.h.

  #define MAP_VOXEL_SIZE 'map.3D_reconstruction.voxel_size'

Definition at line 46 of file mg_tags.h.

  #define MARKER 'marker'

Definition at line 268 of file mg_tags.h.

  #define MARKER_ERROR_X 'marker.error_x'

Definition at line 274 of file mg_tags.h.

  #define MARKER_ERROR_Y 'marker.error_y'

Definition at line 275 of file mg_tags.h.

  #define MARKER_ERROR_Z 'marker.error_z'

Definition at line 276 of file mg_tags.h.

  #define MARKER_FOM 'marker.fom'

Definition at line 279 of file mg_tags.h.

  #define MARKER_ID 'marker.id'

Definition at line 270 of file mg_tags.h.

  #define MARKER_IMAGE 'marker.image_number'

Definition at line 277 of file mg_tags.h.

  #define MARKER_RADIUS 'marker.radius'

Definition at line 269 of file mg_tags.h.

  #define MARKER_RESIDUAL 'marker.residual'

Definition at line 278 of file mg_tags.h.

  #define MARKER_SELECT 'marker.select'

Definition at line 280 of file mg_tags.h.

  #define MARKER_X 'marker.x'

Definition at line 271 of file mg_tags.h.

  #define MARKER_Y 'marker.y'

Definition at line 272 of file mg_tags.h.

  #define MARKER_Z 'marker.z'

Definition at line 273 of file mg_tags.h.

  #define MICROGRAPH 'micrograph'

Definition at line 59 of file mg_tags.h.

  #define MICROGRAPH_BAD 'micrograph.bad'

Definition at line 135 of file mg_tags.h.

  #define MICROGRAPH_BAD_RADIUS 'micrograph.bad_radius'

Definition at line 136 of file mg_tags.h.

  #define MICROGRAPH_BAD_X 'micrograph.bad_x'

Definition at line 137 of file mg_tags.h.

  #define MICROGRAPH_BAD_Y 'micrograph.bad_y'

Definition at line 138 of file mg_tags.h.

  #define MICROGRAPH_BAD_Z 'micrograph.bad_z'

Definition at line 139 of file mg_tags.h.

  #define MICROGRAPH_BOX_RADIUS 'micrograph.box_radius'

Definition at line 131 of file mg_tags.h.

  #define MICROGRAPH_BOX_RADIUS_X 'micrograph.box_radius_x'

Definition at line 132 of file mg_tags.h.

  #define MICROGRAPH_BOX_RADIUS_Y 'micrograph.box_radius_y'

Definition at line 133 of file mg_tags.h.

  #define MICROGRAPH_BOX_RADIUS_Z 'micrograph.box_radius_z'

Definition at line 134 of file mg_tags.h.

  #define MICROGRAPH_CTF_ALPHA 'micrograph.ctf.alpha'

Definition at line 120 of file mg_tags.h.

  #define MICROGRAPH_CTF_AMP_CONT 'micrograph.ctf.amp_contrast'

Definition at line 122 of file mg_tags.h.

  #define MICROGRAPH_CTF_AST_ANG 'micrograph.ctf.astigmatism_angle'

Definition at line 128 of file mg_tags.h.

  #define MICROGRAPH_CTF_BASELINE 'micrograph.ctf.baseline'

Definition at line 129 of file mg_tags.h.

  #define MICROGRAPH_CTF_CC 'micrograph.ctf.Cc'

Definition at line 119 of file mg_tags.h.

  #define MICROGRAPH_CTF_CS 'micrograph.ctf.Cs'

Definition at line 118 of file mg_tags.h.

  #define MICROGRAPH_CTF_DE 'micrograph.ctf.energy_spread'

Definition at line 121 of file mg_tags.h.

  #define MICROGRAPH_CTF_DEF_AVG 'micrograph.ctf.defocus_average'

Definition at line 124 of file mg_tags.h.

  #define MICROGRAPH_CTF_DEF_DEV 'micrograph.ctf.defocus_deviation'

Definition at line 125 of file mg_tags.h.

  #define MICROGRAPH_CTF_DEF_MAX 'micrograph.ctf.defocus_max'

Definition at line 127 of file mg_tags.h.

  #define MICROGRAPH_CTF_DEF_MIN 'micrograph.ctf.defocus_min'

Definition at line 126 of file mg_tags.h.

  #define MICROGRAPH_CTF_ENVELOPE 'micrograph.ctf.envelope'

Definition at line 130 of file mg_tags.h.

  #define MICROGRAPH_CTF_ZERO 'micrograph.ctf.first_zero'

Definition at line 123 of file mg_tags.h.

  #define MICROGRAPH_DOSE 'micrograph.electron_dose'

Definition at line 80 of file mg_tags.h.

  #define MICROGRAPH_FIELD_ID 'micrograph.field_id'

Definition at line 72 of file mg_tags.h.

  #define MICROGRAPH_FILAMENT_FILE 'micrograph_filament.file_name'

Definition at line 68 of file mg_tags.h.

  #define MICROGRAPH_FILAMENT_WIDTH 'micrograph.filament_width'

Definition at line 149 of file mg_tags.h.

  #define MICROGRAPH_FILE 'micrograph.file_name'

Definition at line 60 of file mg_tags.h.

  #define MICROGRAPH_FILNODE_RADIUS 'micrograph.filament_node_radius'

Definition at line 150 of file mg_tags.h.

  #define MICROGRAPH_FOM 'micrograph.fom'

Definition at line 75 of file mg_tags.h.

  #define MICROGRAPH_FRAME 'micrograph_frame.number'

Definition at line 62 of file mg_tags.h.

  #define MICROGRAPH_FRAME_FOM 'micrograph_frame.fom'

Definition at line 66 of file mg_tags.h.

  #define MICROGRAPH_FRAME_SELECT 'micrograph_frame.select'

Definition at line 65 of file mg_tags.h.

  #define MICROGRAPH_FRAME_SHIFT_X 'micrograph_frame.shift_x'

Definition at line 63 of file mg_tags.h.

  #define MICROGRAPH_FRAME_SHIFT_Y 'micrograph_frame.shift_y'

Definition at line 64 of file mg_tags.h.

  #define MICROGRAPH_FRAMES_FILE 'micrograph_frames.file_name'

Definition at line 61 of file mg_tags.h.

  #define MICROGRAPH_HELIX_ANGLE 'micrograph.helix_subunit_angle'

Definition at line 115 of file mg_tags.h.

  #define MICROGRAPH_HELIX_AXIS 'micrograph.helix_axis_angle'

Definition at line 113 of file mg_tags.h.

  #define MICROGRAPH_HELIX_RADIUS 'micrograph.helix_radius'

Definition at line 116 of file mg_tags.h.

  #define MICROGRAPH_HELIX_RISE 'micrograph.helix_subunit_rise'

Definition at line 114 of file mg_tags.h.

  #define MICROGRAPH_HVEC_X 'micrograph.h_x'

Definition at line 104 of file mg_tags.h.

  #define MICROGRAPH_HVEC_Y 'micrograph.h_y'

Definition at line 105 of file mg_tags.h.

  #define MICROGRAPH_HVEC_Z 'micrograph.h_z'

Definition at line 106 of file mg_tags.h.

  #define MICROGRAPH_ID 'micrograph.id'

Definition at line 71 of file mg_tags.h.

  #define MICROGRAPH_KVEC_X 'micrograph.k_x'

Definition at line 107 of file mg_tags.h.

  #define MICROGRAPH_KVEC_Y 'micrograph.k_y'

Definition at line 108 of file mg_tags.h.

  #define MICROGRAPH_KVEC_Z 'micrograph.k_z'

Definition at line 109 of file mg_tags.h.

  #define MICROGRAPH_LEVEL_ANGLE 'micrograph.level_angle'

Definition at line 89 of file mg_tags.h.

  #define MICROGRAPH_LVEC_X 'micrograph.l_x'

Definition at line 110 of file mg_tags.h.

  #define MICROGRAPH_LVEC_Y 'micrograph.l_y'

Definition at line 111 of file mg_tags.h.

  #define MICROGRAPH_LVEC_Z 'micrograph.l_z'

Definition at line 112 of file mg_tags.h.

  #define MICROGRAPH_MAGNIFICATION 'micrograph.magnification'

Definition at line 76 of file mg_tags.h.

  #define MICROGRAPH_MARKER_ERROR_X 'micrograph.marker_error_x'

Definition at line 145 of file mg_tags.h.

  #define MICROGRAPH_MARKER_ERROR_Y 'micrograph.marker_error_y'

Definition at line 146 of file mg_tags.h.

  #define MICROGRAPH_MARKER_ERROR_Z 'micrograph.marker_error_z'

Definition at line 147 of file mg_tags.h.

  #define MICROGRAPH_MARKER_FOM 'micrograph.marker_fom'

Definition at line 148 of file mg_tags.h.

  #define MICROGRAPH_MARKER_ID 'micrograph.marker_id'

Definition at line 141 of file mg_tags.h.

  #define MICROGRAPH_MARKER_RADIUS 'micrograph.marker_radius'

Definition at line 140 of file mg_tags.h.

  #define MICROGRAPH_MARKER_X 'micrograph.marker_x'

Definition at line 142 of file mg_tags.h.

  #define MICROGRAPH_MARKER_Y 'micrograph.marker_y'

Definition at line 143 of file mg_tags.h.

  #define MICROGRAPH_MARKER_Z 'micrograph.marker_z'

Definition at line 144 of file mg_tags.h.

  #define MICROGRAPH_MATRIX_1_1 'micrograph.matrix_1_1'

Definition at line 95 of file mg_tags.h.

  #define MICROGRAPH_MATRIX_1_2 'micrograph.matrix_1_2'

Definition at line 96 of file mg_tags.h.

  #define MICROGRAPH_MATRIX_1_3 'micrograph.matrix_1_3'

Definition at line 97 of file mg_tags.h.

  #define MICROGRAPH_MATRIX_2_1 'micrograph.matrix_2_1'

Definition at line 98 of file mg_tags.h.

  #define MICROGRAPH_MATRIX_2_2 'micrograph.matrix_2_2'

Definition at line 99 of file mg_tags.h.

  #define MICROGRAPH_MATRIX_2_3 'micrograph.matrix_2_3'

Definition at line 100 of file mg_tags.h.

  #define MICROGRAPH_MATRIX_3_1 'micrograph.matrix_3_1'

Definition at line 101 of file mg_tags.h.

  #define MICROGRAPH_MATRIX_3_2 'micrograph.matrix_3_2'

Definition at line 102 of file mg_tags.h.

  #define MICROGRAPH_MATRIX_3_3 'micrograph.matrix_3_3'

Definition at line 103 of file mg_tags.h.

  #define MICROGRAPH_NUMBER 'micrograph.number'

Definition at line 73 of file mg_tags.h.

  #define MICROGRAPH_ORIGIN_X 'micrograph.origin_x'

Definition at line 81 of file mg_tags.h.

  #define MICROGRAPH_ORIGIN_Y 'micrograph.origin_y'

Definition at line 82 of file mg_tags.h.

  #define MICROGRAPH_ORIGIN_Z 'micrograph.origin_z'

Definition at line 83 of file mg_tags.h.

  #define MICROGRAPH_PARTICLE_FILE 'micrograph_particle.file_name'

Definition at line 67 of file mg_tags.h.

  #define MICROGRAPH_PIXEL 'micrograph.pixel_size'

Definition at line 78 of file mg_tags.h.

  #define MICROGRAPH_POWERSPEC_FILE 'micrograph_powerspectrum.file_name'

Definition at line 70 of file mg_tags.h.

  #define MICROGRAPH_ROT_ANGLE 'micrograph.rotation_angle'

Definition at line 90 of file mg_tags.h.

  #define MICROGRAPH_SAMPLING 'micrograph.sampling'

Definition at line 77 of file mg_tags.h.

  #define MICROGRAPH_SCALE_X 'micrograph.scale_x'

Definition at line 84 of file mg_tags.h.

  #define MICROGRAPH_SCALE_Y 'micrograph.scale_y'

Definition at line 85 of file mg_tags.h.

  #define MICROGRAPH_SCALE_Z 'micrograph.scale_z'

Definition at line 86 of file mg_tags.h.

  #define MICROGRAPH_SELECT 'micrograph.select'

Definition at line 74 of file mg_tags.h.

  #define MICROGRAPH_TILT_ANGLE 'micrograph.tilt_angle'

Definition at line 88 of file mg_tags.h.

  #define MICROGRAPH_TILT_AXIS 'micrograph.tilt_axis'

Definition at line 87 of file mg_tags.h.

  #define MICROGRAPH_TRANSFORM_FILE 'micrograph_fourier_transform.file_name'

Definition at line 69 of file mg_tags.h.

  #define MICROGRAPH_UNITS 'micrograph.units'

Definition at line 79 of file mg_tags.h.

  #define MICROGRAPH_VIEW_ANGLE 'micrograph.view_angle'

Definition at line 94 of file mg_tags.h.

  #define MICROGRAPH_VIEW_X 'micrograph.view_x'

Definition at line 91 of file mg_tags.h.

  #define MICROGRAPH_VIEW_Y 'micrograph.view_y'

Definition at line 92 of file mg_tags.h.

  #define MICROGRAPH_VIEW_Z 'micrograph.view_z'

Definition at line 93 of file mg_tags.h.

  #define MICROGRAPH_VOLTAGE 'micrograph.voltage'

Definition at line 117 of file mg_tags.h.

  #define ORIENT_FOM 'orient.fom'

Definition at line 264 of file mg_tags.h.

  #define ORIENT_ID 'orient.id'

Definition at line 256 of file mg_tags.h.

  #define ORIENT_ORIGIN_X 'orient.origin_x'

Definition at line 257 of file mg_tags.h.

  #define ORIENT_ORIGIN_Y 'orient.origin_y'

Definition at line 258 of file mg_tags.h.

  #define ORIENT_ORIGIN_Z 'orient.origin_z'

Definition at line 259 of file mg_tags.h.

  #define ORIENT_SELECT 'orient.select'

Definition at line 265 of file mg_tags.h.

  #define ORIENT_VIEW_ANGLE 'orient.view_angle'

Definition at line 263 of file mg_tags.h.

  #define ORIENT_VIEW_X 'orient.view_x'

Definition at line 260 of file mg_tags.h.

  #define ORIENT_VIEW_Y 'orient.view_y'

Definition at line 261 of file mg_tags.h.

  #define ORIENT_VIEW_Z 'orient.view_z'

Definition at line 262 of file mg_tags.h.

  #define PARTICLE 'particle'

Definition at line 171 of file mg_tags.h.

  #define PARTICLE_AST_ANG 'particle.astigmatism_angle'

Definition at line 201 of file mg_tags.h.

  #define PARTICLE_BAD 'particle.bad'

Definition at line 234 of file mg_tags.h.

  #define PARTICLE_BAD_RADIUS 'particle.bad_radius'

Definition at line 235 of file mg_tags.h.

  #define PARTICLE_BAD_X 'particle.bad_x'

Definition at line 236 of file mg_tags.h.

  #define PARTICLE_BAD_Y 'particle.bad_y'

Definition at line 237 of file mg_tags.h.

  #define PARTICLE_BAD_Z 'particle.bad_z'

Definition at line 238 of file mg_tags.h.

  #define PARTICLE_BOX_RADIUS 'particle.box_radius'

Definition at line 230 of file mg_tags.h.

  #define PARTICLE_BOX_RADIUS_X 'particle.box_radius_x'

Definition at line 231 of file mg_tags.h.

  #define PARTICLE_BOX_RADIUS_Y 'particle.box_radius_y'

Definition at line 232 of file mg_tags.h.

  #define PARTICLE_BOX_RADIUS_Z 'particle.box_radius_z'

Definition at line 233 of file mg_tags.h.

  #define PARTICLE_BOX_SIZE 'particle.box_size'

Definition at line 226 of file mg_tags.h.

  #define PARTICLE_BOX_SIZE_X 'particle.box_size_x'

Definition at line 227 of file mg_tags.h.

  #define PARTICLE_BOX_SIZE_Y 'particle.box_size_y'

Definition at line 228 of file mg_tags.h.

  #define PARTICLE_BOX_SIZE_Z 'particle.box_size_z'

Definition at line 229 of file mg_tags.h.

  #define PARTICLE_CC 'particle.cc'

Definition at line 219 of file mg_tags.h.

  #define PARTICLE_CC_AVG 'particle.cc_avg'

Definition at line 220 of file mg_tags.h.

  #define PARTICLE_CMP_CC 'particle.cmp_cc'

Definition at line 223 of file mg_tags.h.

  #define PARTICLE_COVERAGE 'particle.coverage'

Definition at line 225 of file mg_tags.h.

  #define PARTICLE_DEF_DEV 'particle.defocus_deviation'

Definition at line 200 of file mg_tags.h.

  #define PARTICLE_DEFOCUS 'particle.defocus'

Definition at line 199 of file mg_tags.h.

  #define PARTICLE_FILE 'particle.file_name'

Definition at line 172 of file mg_tags.h.

  #define PARTICLE_FOM 'particle.fom'

Definition at line 203 of file mg_tags.h.

  #define PARTICLE_FOM1 'particle.fom1'

Definition at line 208 of file mg_tags.h.

  #define PARTICLE_FOM2 'particle.fom2'

Definition at line 209 of file mg_tags.h.

  #define PARTICLE_FOM3 'particle.fom3'

Definition at line 210 of file mg_tags.h.

  #define PARTICLE_FOM4 'particle.fom4'

Definition at line 211 of file mg_tags.h.

  #define PARTICLE_FOM5 'particle.fom5'

Definition at line 212 of file mg_tags.h.

  #define PARTICLE_FOM6 'particle.fom6'

Definition at line 213 of file mg_tags.h.

  #define PARTICLE_FOM7 'particle.fom7'

Definition at line 214 of file mg_tags.h.

  #define PARTICLE_FOM8 'particle.fom8'

Definition at line 215 of file mg_tags.h.

  #define PARTICLE_FOM9 'particle.fom9'

Definition at line 216 of file mg_tags.h.

  #define PARTICLE_FOM_AVG 'particle.fom_average'

Definition at line 206 of file mg_tags.h.

  #define PARTICLE_FOM_CV 'particle.fom_crossvalidation'

Definition at line 204 of file mg_tags.h.

  #define PARTICLE_FOM_SNR 'particle.signal_to_noise'

Definition at line 205 of file mg_tags.h.

  #define PARTICLE_FOM_STD 'particle.fom_stdev'

Definition at line 207 of file mg_tags.h.

  #define PARTICLE_GROUP 'particle.group_id'

Definition at line 175 of file mg_tags.h.

  #define PARTICLE_HANDA_FOM 'particle.handa_fom'

Definition at line 217 of file mg_tags.h.

  #define PARTICLE_HANDB_FOM 'particle.handb_fom'

Definition at line 218 of file mg_tags.h.

  #define PARTICLE_ID 'particle.id'

Definition at line 174 of file mg_tags.h.

  #define PARTICLE_MAGNIF 'particle.magnification'

Definition at line 197 of file mg_tags.h.

  #define PARTICLE_MG_ID 'particle.micrograph_id'

Definition at line 176 of file mg_tags.h.

  #define PARTICLE_MG_X 'particle.micrograph_x'

Definition at line 177 of file mg_tags.h.

  #define PARTICLE_MG_Y 'particle.micrograph_y'

Definition at line 178 of file mg_tags.h.

  #define PARTICLE_MG_Z 'particle.micrograph_z'

Definition at line 179 of file mg_tags.h.

  #define PARTICLE_NUMBER 'particle.number'

Definition at line 173 of file mg_tags.h.

  #define PARTICLE_OMEGA 'particle.omega'

Definition at line 192 of file mg_tags.h.

  #define PARTICLE_ORIGIN_X 'particle.origin_x'

Definition at line 186 of file mg_tags.h.

  #define PARTICLE_ORIGIN_Y 'particle.origin_y'

Definition at line 187 of file mg_tags.h.

  #define PARTICLE_ORIGIN_Z 'particle.origin_z'

Definition at line 188 of file mg_tags.h.

  #define PARTICLE_PFT_CC 'particle.pft_cc'

Definition at line 221 of file mg_tags.h.

  #define PARTICLE_PHI 'particle.phi'

Definition at line 191 of file mg_tags.h.

  #define PARTICLE_PIXEL 'particle.pixel_size'

Definition at line 198 of file mg_tags.h.

  #define PARTICLE_PRJ_CC 'particle.prj_cc'

Definition at line 222 of file mg_tags.h.

  #define PARTICLE_PSI 'particle.psi'

Definition at line 189 of file mg_tags.h.

  #define PARTICLE_RFACTORAB 'particle.rfactorab'

Definition at line 224 of file mg_tags.h.

  #define PARTICLE_SELECT 'particle.select'

Definition at line 202 of file mg_tags.h.

  #define PARTICLE_THETA 'particle.theta'

Definition at line 190 of file mg_tags.h.

  #define PARTICLE_VIEW_ANGLE 'particle.view_angle'

Definition at line 196 of file mg_tags.h.

  #define PARTICLE_VIEW_X 'particle.view_x'

Definition at line 193 of file mg_tags.h.

  #define PARTICLE_VIEW_Y 'particle.view_y'

Definition at line 194 of file mg_tags.h.

  #define PARTICLE_VIEW_Z 'particle.view_z'

Definition at line 195 of file mg_tags.h.

  #define PARTICLE_X 'particle.x'

Definition at line 180 of file mg_tags.h.

  #define PARTICLE_X_ORIGIN 'particle.x_origin'

Definition at line 183 of file mg_tags.h.

  #define PARTICLE_Y 'particle.y'

Definition at line 181 of file mg_tags.h.

  #define PARTICLE_Y_ORIGIN 'particle.y_origin'

Definition at line 184 of file mg_tags.h.

  #define PARTICLE_Z 'particle.z'

Definition at line 182 of file mg_tags.h.

  #define PARTICLE_Z_ORIGIN 'particle.z_origin'

Definition at line 185 of file mg_tags.h.

  #define PROJECT 'project'

Definition at line 24 of file mg_tags.h.

  #define REFLEX 'refln'

Definition at line 283 of file mg_tags.h.

  #define REFLEX_AMP 'refln.F_meas_au'

Definition at line 291 of file mg_tags.h.

  #define REFLEX_FOM 'refln.weight'

Definition at line 296 of file mg_tags.h.

  #define REFLEX_H 'refln.index_h'

Definition at line 288 of file mg_tags.h.

  #define REFLEX_K 'refln.index_k'

Definition at line 289 of file mg_tags.h.

  #define REFLEX_L 'refln.index_l'

Definition at line 290 of file mg_tags.h.

  #define REFLEX_PHI 'refln.phase_meas'

Definition at line 294 of file mg_tags.h.

  #define REFLEX_RADIUS 'refln.radius'

Definition at line 284 of file mg_tags.h.

  #define REFLEX_SIGAMP 'refln.F_meas_sigma_au'

Definition at line 293 of file mg_tags.h.

  #define REFLEX_SIGPHI 'refln.phase_sigma'

Definition at line 295 of file mg_tags.h.

  #define REFLEX_STATUS 'refln.status'

Definition at line 297 of file mg_tags.h.

  #define REFLEX_X 'refln.location_x'

Definition at line 285 of file mg_tags.h.

  #define REFLEX_Y 'refln.location_y'

Definition at line 286 of file mg_tags.h.

  #define REFLEX_Z 'refln.location_z'

Definition at line 287 of file mg_tags.h.

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