/Users/bernard/b20/bsoft/include Directory Reference(3)

NAME
/Users/bernard/b20/bsoft/include Directory Reference

SYNOPSIS

  Files
file Bimage.h
Header file for image class.
file binomial.h
Functions to generate and fit binomials.
file Bplot.h
Header file for postscript output functions.
file Bstring.h
Header file for the string class.
file Bsuperpixel.h
Super pixel segmentation.
file cluster.h
Header file for clustering functions.
file Color.h
Classes for color objects.
file Complex.h
Class for complex numbers.
file ctf.h
Header file for CTF (contrast transfer function) functions.
file dynamic_programming.h
Library functions for dynamic programming.
file Euler.h
Euler object.
file fft.h
General FFT for n-dimensional data.
file file_util.h
Header file for file checking functions.
file FSI_Kernel.h
Header file for frequency space interpolation kernel.
file img_combine.h
Header file for combining two images in various ways.
file json.h
file linked_list.h
Header file for generalized linked list functions.
file marker.h
Header file for image parameter functions.
file math_util.h
Header file for general utilities.
file Matrix.h
Generalized matrix class.
file Matrix3.h
3x3 Matrix manipulation functions
file matrix_linear.h
Header file for matrix functions.
file matrix_util.h
Utility functions for matrices.
file mdoc.h
file mg_align.h
Header file for functions to align micrographs or coordinates from micrographs and apply the resultant transformation.
file mg_class.h
Header file for classification of raw single particle images with respect to multiple models.
file mg_ctf.h
Functions for CTF (contrast transfer function) processing.
file mg_ctf_fit.h
Header file for CTF (contrast transfer function) functions.
file mg_extract.h
Header file for functions to extract particles from micrographs.
file mg_hand.h
Author: David Belnap.
file mg_helix.h
Header file for functions to process helical data.
file mg_img_proc.h
Header file for image processing from micrograph structures.
file mg_marker.h
Header file for micrograph marker functions.
file mg_merge.h
Header file for functions to merge images.
file mg_multiple.h
Selection of single particle parameters from multiple files for classification.
file mg_multislice.h
Generates and manipulates projects for multislice calculations.
file mg_orient.h
Library routines for single particle analysis.
file mg_particle_select.h
Select particles.
file mg_particles.h
Manipulates single particle images.
file mg_pick.h
Header file for single particle picking functions.
file mg_processing.h
Header file for micrograph processing.
file mg_random.h
Header file for applying some randomization to parameters.
file mg_reconstruct.h
Functions for reconstruction.
file mg_refine.h
Reciprocal space refinement of orientation parameters of particle images.
file mg_subtomo.h
Header file for functions finding particles (subtomograms) in a tomogram.
file mg_tags.h
All STAR and XML file format tags for micrographs and reconstructions.
file mg_tomo_rec.h
Functions to do a tomographic reconstruction.
file mg_tomo_resol.h
Functions to assess the resoltion of a tomographic tilt series.
file mg_tomo_track.h
Functions to track fiducial markers in a tomographic series of images.
file mg_tomography.h
Header file for single particle image processing in Bsoft.
file mg_xtal.h
Header file for functions to process crystallographic data.
file model_color.h
Functions to color models.
file model_compare.h
Functions to compare models and components.
file model_create.h
Library routines used for model creation.
file model_extract_build.h
Functions to extract subvolumes and build new maps.
file model_links.h
Library routines used for model link processing.
file model_map.h
Header file for model to map conversions.
file model_mask.h
Functions to generate masks from models.
file model_mechanics.h
Functions to do molecular mechanics.
file model_multifit.h
Header file for searching for a template in a map and returning multiple hits in a model.
file model_neighbors.h
Functions to manipulate model component neighbors.
file model_occupancy.h
Library routines to count components in maps.
file model_path.h
Library routines used for model processing.
file model_plane.h
Library routines used for plane models.
file model_poly.h
Functions to manipulate polyhedral coordinate files.
file model_poly_delta.h
Functions to generate deltagraph polyhedra.
file model_poly_spiral.h
Functions to generate polyhedra using the spiral algorithm.
file model_select.h
Header file for reading and writing atomic model files.
file model_shell.h
Library routines used for shell model processing.
file model_symmetry.h
Library routines used for model symmetry operations.
file model_tags.h
All STAR and XML file format tags for models.
file model_transform.h
Library routines used for model transformation.
file model_util.h
Library routines used for model processing.
file model_views.h
Library routines used for analysing model component views.
file mol_alpha.h
Header for functions to make and analyze alpha helices.
file mol_bonds.h
Header for molecular dynamics.
file mol_compare.h
Library routines used to compare sets of atomic coordinates.
file mol_edit.h
Library routines used for atomic coordinates.
file mol_map_energy.h
Headers of functions to calculate estimates of the fitting of molecules to maps.
file mol_md.h
Header for molecular dynamics.
file mol_monte.h
Headers of functions using a monte carlo metroplis algorithm to energy minimize molecular positions.
file mol_param.h
Header for functions to extract parameters from coordinate files.
file mol_select.h
Library routines to select atomic coordinates.
file mol_symmetry.h
Library routines used for symmetry operations on atomic coordinates.
file mol_tags.h
All STAR file format tags for molecules and molecular parameters.
file mol_transform.h
Library routines used for atomic coordinate transformations.
file mol_util.h
Library routines used for atomic coordinates.
file mol_water.h
Generating and managing water.
file molecule_to_map.h
Header file for functions to calculate a 3D map from atomic coordinates.
file moving_average.h
Header file moving average calculations.
file options.h
Header file for option handlers.
file ps_ctf_plot.h
Header file for postscript output functions.
file ps_marker.h
Header file for postscript tools dealing with Bmarkers.
file ps_micrograph.h
Header file for postscript tools dealing with micrograph particle sets.
file ps_model.h
Header file for postscript tools dealing with models.
file ps_plot.h
Header file for postscript output functions.
file ps_sequence.h
Header file for postscript output for sequence analysis functions.
file ps_tree.h
Header file for writing a tree into a postcsript file.
file ps_views.h
Header file for postscript tools dealing with views.
file qsort_functions.h
Header file for utility functions for use in qsort calls.
file Quaternion.h
Class for quaternions.
file random_numbers.h
Header file for functions for creating random images.
file rwASCII.h
Header file for reading and writing ASCII files.
file rwatomprop.h
Header file for reading atom property files.
file rwBCR.h
Header file for reading and writing AFM BCR-STM files.
file rwBIORAD.h
Header file for reading and writing BioRad files.
file rwBRIX.h
Header file for reading and writing Brix files.
file rwBrookhavenSTEM.h
Header file for reading and writing Brookhaven STEM files.
file rwCCP4.h
Header file for reading and writing CCP4 files.
file rwClustal.h
Header file for reading and writing Clustal sequence files.
file rwDI.h
Header file for reading (only) Digital Instruments files.
file rwDM.h
Header file for reading and writing DM files.
file rwDSN6.h
Header file for reading and writing DSN6 files.
file rwDX.h
Header file for reading and writing OpenDX files.
file rwEM.h
Header file for reading and writing EM files.
file rwEMBL.h
Header file for reading and writing EMBL sequence files.
file rwFASTA.h
Header file for reading and writing FASTA sequence files.
file rwFSC_XML.h
Library routines to read and write FSC curves.
file rwGenBank.h
Header file for reading and writing GenBank sequence files.
file rwgencode.h
Header file for reading a genetic code from a file.
file rwGOODFORD.h
Header file for reading and writing Peter Goodford's GRID files.
file rwGRD.h
Header file for reading and writing Basel GRD files.
file rwGROMACS.h
Header file for reading and writing GROMACS coordinate files.
file rwHKL.h
Header file for reading and writing HKL reflection files as images.
file rwIMAGIC.h
Header file for reading and writing Image Science's Imagic files.
file rwimg.h
Header file for 2D and 3D image I/O.
file rwIP.h
Header file for reading and writing image plate reader files.
file rwJPEG.h
Header file for reading and writing JPEG files.
file rwkernel.h
Header file for functions to read and write kernel files.
file rwmatrix.h
Header file for reading (and writing) matrices.
file rwmd.h
Header to read and write molecular dynamics parameters in STAR format.
file rwMFF.h
Header file for reading and writing the What If MFF files.
file rwmg.h
Header file for reading and writing micrograph parameters.
file rwmgEMX.h
Reads and writes micrograph exchange files.
file rwmgIMOD.h
Converts between IMOD files and a micrograph parameter file.
file rwmgRELION.h
Header file for reading and writing micrograph parameters from and to the RELION STAR format.
file rwmgSerialEM.h
Converts between SerialEM MDOC files and a micrograph parameter file.
file rwmgSTAR.h
Header file for reading and writing micrograph parameters from and to the STAR format.
file rwmgXML.h
Reads and writes micrograph XML files.
file rwMIFF.h
file rwmodel.h
Header file for reading and writing atomic model files.
file rwmodel_bild.h
Header file for reading and writing Chimera BILD files.
file rwmodel_cmm.h
Header file for reading and writing Chimera marker model parameters.
file rwmodel_mol.h
Header file for reading and writing molecular model parameters.
file rwmodel_param.h
Header to read and write model dynamics parameters in STAR format.
file rwmodel_star.h
Header file for reading and writing STAR model parameters.
file rwmodel_vega.h
Header file for reading and writing Vega model parameters.
file rwmodel_xml.h
Read and write models in XML format.
file rwmol_star.h
Read and write molecules in STAR format.
file rwmol_text.h
Read and write molecules in plain text.
file rwmolecule.h
Header file for reading reflection files.
file rwMRC.h
Header file for reading and writing MRC files.
file rwPDB.h
Header file for reading and writing PDB coordinate files.
file rwPhylip.h
Header file for reading and writing Phylip sequence files.
file rwPIC.h
Header file for reading and writing PIC's BP and BQ files.
file rwPIF.h
Header file for reading and writing PIF files.
file rwPIR.h
Header file for reading and writing PIR sequence files.
file rwPNG.h
Header file for reading and writing PNG files.
file rwPNM.h
Header file for reading and writing PNM files.
file rwPostScript.h
Header file for (reading and) writing postscript image files.
file rwRAW.h
Header file for reading and writing Raw files.
file rwresprop.h
Header file for reading residue property files.
file rwSER.h
Header file for reading and writing FEI Ser files.
file rwSitus.h
Header file for reading and writing Situs files.
file rwSPE.h
Header file for reading and writing SPE files.
file rwSPIDER.h
Header file for reading and writing SPIDER files.
file rwstar.h
A header file for STAR format files.
file rwSUPRIM.h
Header file for reading and writing SUPRIM files.
file rwsymop.h
Header file for reading and writing symmetry operators.
file rwTGA.h
Header file for reading and writing Truevision TGA files.
file rwTIFF.h
Header file for reading and writing TIFF files.
file rwtree.h
Header file for reading (and writing) trees.
file rwWAH.h
Header file for reading and writing Wayne Hendrickson coordinate files.
file rwxml.h
Reads and writes micrograph XML files.
file rwXPLOR.h
Header file for reading and writing XPLOR reflection files.
file seq_align.h
Header file for functions to generate and analyze dot plots.
file seq_analysis.h
Header file for sequence analysis functions.
file seq_util.h
Header file for sequence utilities.
file simplex.h
Nelder and Mead downhill simplex method for generalized parameter fitting.
file spline.h
Header file for spline interpolation.
file string_util.h
file sym_tags.h
All STAR file format tags for symmetry parameters.
file symmetry.h
Header file for general symmetry functions.
file timer.h
Utilities for timing functions.
file Transform.h
Class for a generalized transform object.
file UnitCell.h
Header file for unit cell functions.
file utilities.h
Header file for general utilities.
file Vector3.h
Class for 3-value vectors.
file View.h
View object.