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<section xmlns="http://docbook.org/ns/docbook" version="5.0" xmlns:xlink="http://www.w3.org/1999/xlink" xml:id="_dir_b7878ad5ecbf2506f4125b9d34c97e45">
<title>/Users/bernard/b20/bsoft/src/util Directory Reference</title>
<indexterm><primary>/Users/bernard/b20/bsoft/src/util Directory Reference</primary></indexterm>
<simplesect>
    <title>Files    </title>
        <itemizedlist>
            <listitem><para>file <link linkend="_binomial_8cpp">binomial.cpp</link></para>

<para>Functions to generate and fit binomials. </para>
</listitem>
            <listitem><para>file <link linkend="__bplot_8cpp">Bplot.cpp</link></para>

<para>Postscript output functions. </para>
</listitem>
            <listitem><para>file <link linkend="__bstring_8cpp">Bstring.cpp</link></para>

<para>Functions in the string class. </para>
</listitem>
            <listitem><para>file <link linkend="_cluster_8cpp">cluster.cpp</link></para>

<para>Clustering functions. </para>
</listitem>
            <listitem><para>file <link linkend="_ctf_8cpp">ctf.cpp</link></para>

<para>Functions to manage CTF (contrast transfer function) parameters. </para>
</listitem>
            <listitem><para>file <link linkend="_dynamic__programming_8cpp">dynamic_programming.cpp</link></para>

<para>Library functions for dynamic programming. </para>
</listitem>
            <listitem><para>file <link linkend="_fft_8cpp">fft.cpp</link></para>

<para>General FFT for n-dimensional data. </para>
</listitem>
            <listitem><para>file <link linkend="_file__util_8cpp">file_util.cpp</link></para>

<para>Library functions for file checking. </para>
</listitem>
            <listitem><para>file <link linkend="_json_8cpp">json.cpp</link></para>
</listitem>
            <listitem><para>file <link linkend="_linked__list_8cpp">linked_list.cpp</link></para>

<para>Generalized linked list functions. </para>
</listitem>
            <listitem><para>file <link linkend="_marker_8cpp">marker.cpp</link></para>

<para>Functions for dealing with markers and linkers. </para>
</listitem>
            <listitem><para>file <link linkend="_math__util_8cpp">math_util.cpp</link></para>

<para>Mathematics utility functions. </para>
</listitem>
            <listitem><para>file <link linkend="_matrix_8cpp">matrix.cpp</link></para>

<para><link linkend="_class_matrix">Matrix</link> manipulation functions. </para>
</listitem>
            <listitem><para>file <link linkend="__matrix3_8cpp">Matrix3.cpp</link></para>

<para><link linkend="_class_matrix">Matrix</link> manipulation functions. </para>
</listitem>
            <listitem><para>file <link linkend="_matrix__linear_8cpp">matrix_linear.cpp</link></para>

<para>Solving sets of linear equations through matrix algebra. </para>
</listitem>
            <listitem><para>file <link linkend="_matrix__util_8cpp">matrix_util.cpp</link></para>

<para>Utility functions for matrices. </para>
</listitem>
            <listitem><para>file <link linkend="_moving__average_8cpp">moving_average.cpp</link></para>

<para>Functions for moving average calculations. </para>
</listitem>
            <listitem><para>file <link linkend="_options_8cpp">options.cpp</link></para>

<para>Functions to handle general options. </para>
</listitem>
            <listitem><para>file <link linkend="_qsort__functions_8cpp">qsort_functions.cpp</link></para>

<para>Library utility functions for use in qsort calls. </para>
</listitem>
            <listitem><para>file <link linkend="__quaternion_8cpp">Quaternion.cpp</link></para>

<para><link linkend="_class_quaternion">Quaternion</link> functions. </para>
</listitem>
            <listitem><para>file <link linkend="_random__numbers_8cpp">random_numbers.cpp</link></para>

<para>Functions for generating random sequences. </para>
</listitem>
            <listitem><para>file <link linkend="_simplex_8cpp">simplex.cpp</link></para>

<para>Nelder and Mead downhill simplex method for generalized parameter fitting. </para>
</listitem>
            <listitem><para>file <link linkend="_spline_8cpp">spline.cpp</link></para>

<para>Functions to calculate spline curves. </para>
</listitem>
            <listitem><para>file <link linkend="_string__util_8cpp">string_util.cpp</link></para>
</listitem>
            <listitem><para>file <link linkend="_symmetry_8cpp">symmetry.cpp</link></para>

<para>General symmetry functions. </para>
</listitem>
            <listitem><para>file <link linkend="_timer_8cpp">timer.cpp</link></para>

<para>Utilities for timing functions. </para>
</listitem>
            <listitem><para>file <link linkend="__transform_8cpp">Transform.cpp</link></para>

<para><link linkend="_class_transform">Transform</link> manipulation functions. </para>
</listitem>
            <listitem><para>file <link linkend="__unit_cell_8cpp">UnitCell.cpp</link></para>

<para>Unit cell functions. </para>
</listitem>
            <listitem><para>file <link linkend="_utilities_8cpp">utilities.cpp</link></para>

<para>Library functions useful in all the package. </para>
</listitem>
            <listitem><para>file <link linkend="__view_8cpp">View.cpp</link></para>

<para><link linkend="_class_view">View</link> functions. </para>
</listitem>
        </itemizedlist>
</simplesect>
</section>
