| Bsoft 2.0.5 Bernard's software package

### - i -

- image_processing() : tcltk_bimage.cpp , tcltk_bimage.h
- image_render() : tcltk_bimage.cpp
- image_type() : mg_img_proc.h , mg_img_proc.cpp
- imageCoordinatesFromCanvas() : bshow_misc.tcl
- imagic_euler_from_view() : rwIMAGIC.cpp
- img_add() : img_combine.h , img_combine.cpp
- img_add_model_to_mask() : model_mask.h , model_mask.cpp
- img_add_weighed() : img_combine.h , img_combine.cpp
- img_align() : balign.cpp , mg_align.cpp
- img_apply_complex_CTF() : mg_multislice.h , mg_multislice.cpp
- img_assign_pixel() : Bimage_segment.cpp
- img_assign_segments() : Bimage_segment.cpp
- img_backprojection_accumulate() : mg_reconstruct.h , mg_reconstruct.cpp
- img_backtransform_one_y_plane() : mg_tomo_rec.cpp
- img_backtransform_slices() : mg_tomo_rec.h , mg_tomo_rec.cpp
- img_backtransform_z_lines() : mg_tomo_rec.h , mg_tomo_rec.cpp
- img_backtransform_z_on_disk() : mg_tomo_rec.h , mg_tomo_rec.cpp
- img_calc_multi_slice() : mg_multislice.cpp , mg_multislice.h
- img_calc_phase_grating() : mg_multislice.h , mg_multislice.cpp
- img_calc_potential() : mg_multislice.h , mg_multislice.cpp
- img_calc_wave_propagator() : mg_multislice.h , mg_multislice.cpp
- img_calculate_FRC_curve() : mg_tomo_resol.cpp
- img_catenate() : img_combine.h , img_combine.cpp
- img_cc() : bico.cpp
- img_cc_for_view() : bfcc.cpp
- img_clear_extraneous_areas() : mg_tomo_rec.cpp , mg_tomography.cpp
- img_compare_one_projection() : bproject.cpp
- img_compare_projections() : bproject.cpp
- img_compare_projections_driver() : bproject.cpp
- img_compare_projections_lowpass() : bproject.cpp
- img_composite_mask() : baddmask.cpp
- img_convert_fourier() : rwimg.h , rwimg.cpp
- img_convert_fourier_one() : rwimg.cpp
- img_cross_validate() : mg_orient.h , mg_orient.cpp
- img_ctf_apply() : mg_ctf.h , mg_ctf.cpp
- img_ctf_apply_to_proj() : mg_ctf.h , mg_ctf.cpp
- img_ctf_astigmatism_measure() : mg_ctf_fit.cpp
- img_ctf_calculate() : mg_ctf.cpp , mg_ctf.h
- img_ctf_find_defocus() : mg_ctf_fit.h , mg_ctf_fit.cpp
- img_ctf_fit() : mg_ctf_fit.h , mg_ctf_fit.cpp
- img_ctf_fit_astigmatism() : mg_ctf_fit.h , mg_ctf_fit.cpp
- img_ctf_fit_baseline() : mg_ctf_fit.h , mg_ctf_fit.cpp
- img_ctf_fit_envelope() : mg_ctf_fit.h , mg_ctf_fit.cpp
- img_ctf_fit_residual() : mg_ctf_fit.cpp
- img_ctf_radial_average() : mg_ctf_fit.h , mg_ctf_fit.cpp
- img_ctf_radial_subtract_baseline() : mg_ctf_fit.cpp
- img_extract_features() : mg_align.cpp
- img_extract_layer_line() : mg_helix.h , mg_helix.cpp
- img_extract_segments_using_model() : model_mask.h , model_mask.cpp
- img_extract_ytile() : mg_tomo_rec.h , mg_tomo_rec.cpp
- img_f_test() : dimgstats.cpp
- img_fcc_for_view() : bfcc.cpp
- img_fcc_search() : bfcc.cpp
- img_fft_times() : bfft.cpp
- img_find_gold_particles() : mg_tomography.h , mg_tomography.cpp
- img_find_maximum_power() : bmaxpow.cpp
- img_find_peak_subtomo() : mg_subtomo.h , mg_subtomo.cpp
- img_find_refine_peaks() : mg_subtomo.h , mg_subtomo.cpp
- img_fit_in_recip_space_grid() : mg_refine.cpp
- img_fit_in_recip_space_monte() : mg_refine.cpp
- img_fom_sqrt() : dimgstats.cpp
- img_from_matrix() : matrix_util.h , bmatrix.cpp , matrix_util.cpp
- img_from_model() : model_map.h , model_map.cpp
- img_from_molecule() : molecule_to_map.h , molecule_to_map.cpp
- img_gold_particle() : mg_tomography.h , mg_tomography.cpp
- img_impose_difference_from_highest_neighbor() : Bimage_segment.cpp
- img_impose_highest_neighbor() : Bimage_segment.cpp
- img_impose_lowest_neighbor() : Bimage_segment.cpp
- img_impose_segments() : Bimage_segment.cpp
- img_map_distance() : bmapdist.cpp
- img_marker_projection() : mg_tomo_track.cpp
- img_marker_set_difference() : mg_pick.cpp
- img_marker_set_difference_at_voxel() : mg_pick.cpp
- img_mask_above_threshold() : mg_pick.cpp
- img_mask_layer_lines() : mg_helix.h , mg_helix.cpp
- img_mask_reflections() : mg_xtal.h , mg_xtal.cpp
- img_match() : bmatch.cpp
- img_match_one() : bmatch.cpp
- img_pack_2D_in_recip_space_slab() : mg_tomo_rec.h , mg_tomo_rec.cpp
- img_pack_2D_into_central_section() : mg_tomo_resol.h , mg_tomo_resol.cpp
- img_pack_2D_into_central_section_old() : mg_tomo_resol.cpp
- img_pack_into_image() : bpatch.cpp
- img_patch() : bpatch.cpp
- img_phase_shift_slab_to_origin() : mg_tomo_rec.h , mg_tomo_rec.cpp
- img_plot_max_vs_angle() : bcyl.cpp
- img_prepare_for_picking() : mg_pick.cpp
- img_prepare_orientations() : mg_pick.cpp
- img_prepare_projections() : mg_orient.h , mg_orient.cpp , mg_pick.cpp
- img_radon_inverse_transform() : img_radon.h , img_radon.cpp
- img_radon_pocs_filter() : img_radon.cpp , img_radon.h
- img_radon_reconstruction() : img_radon.h , img_radon.cpp
- img_radon_transform() : img_radon.cpp , img_radon.h
- img_read_orient_mask() : bico.cpp
- img_read_projection() : mg_orient.cpp
- img_recip_space_fom() : mg_refine.cpp
- img_reconstruct_2D() : mg_reconstruct.cpp
- img_reconstruct_2D_fspace() : mg_reconstruct.cpp
- img_reconstruct_one() : bmaxpow.cpp
- img_reconstruct_one_v1() : bmaxpow.cpp
- img_reconstruct_one_v2() : bmaxpow.cpp
- img_reconstruct_one_v3() : bmaxpow.cpp
- img_reconstruction_sum_weigh() : mg_reconstruct.h , mg_reconstruct.cpp
- img_reference_prepare() : bmatch.cpp
- img_refine_grid() : mg_refine.cpp
- img_refine_monte() : mg_refine.cpp
- img_refine_view() : mg_subtomo.cpp
- img_resize_to_next_power2() : img_radon.cpp , img_radon.h
- img_search_view() : mg_subtomo.cpp
- img_setup_combined() : img_combine.h , img_combine.cpp
- img_sf_from_molecule() : molecule_to_map.cpp , molecule_to_map.h
- img_stem_lut_apply() : rwBrookhavenSTEM.cpp
- img_students_t_test() : dimgstats.cpp
- img_students_t_test_equal() : dimgstats.cpp
- img_students_t_test_unequal() : dimgstats.cpp
- img_sum_subset() : mg_align.cpp
- img_tile_with_overlap() : btile.cpp
- img_ttf_apply() : mg_ctf.h , mg_ctf.cpp
- img_ttf_apply_one() : mg_ctf.cpp
- img_unique_shift_global_rotate() : mg_merge.cpp
- img_update_segment() : Bimage_segment.cpp
- img_water_ring_index() : mg_ctf_fit.cpp , mg_ctf_fit.h , mg_ctf_fit.cpp
- img_wave_aberration() : mg_ctf.h , mg_ctf.cpp
- img_write_data_block_with_type() : mg_tomo_rec.cpp
- img_write_symmetry_views() : bsym.cpp
- indent() : json.cpp
- indent_line() : json.cpp
- index_from_codon() : rwgencode.cpp , rwgencode.h
- init_point_group_symmetry() : symmetry.cpp , symmetry.h , symmetry.cpp
- init_star() : rwstar.cpp , rwstar.h
- insert() : string_util.cpp , string_util.h
- invertContrast() : bshow_scales.tcl
- invertImage() : bshow_image.tcl
- irm() : random_numbers.cpp
- isfinite() : string_util.h
- item_change_tag() : rwstar.cpp , rwstar.h
- item_copy_string() : rwstar.h , rwstar.cpp
- item_delete_all() : rwstar.h , rwstar.cpp
- item_delete_from_block() : rwstar.cpp , rwstar.h
- item_find() : rwstar.h , rwstar.cpp
- item_find_or_make() : rwstar.h , rwstar.cpp
- item_float_scale_shift() : rwstar.cpp , rwstar.h
- item_get_float() : rwstar.cpp , rwstar.h
- item_get_format() : rwstar.cpp , rwstar.h
- item_get_integer() : rwstar.h , rwstar.cpp
- item_get_number() : rwstar.h , rwstar.cpp
- item_get_number_for_block() : rwstar.h , rwstar.cpp
- item_get_string() : rwstar.cpp , rwstar.h
- item_index() : rwstar.cpp , rwstar.h
- item_integer_scale_shift() : rwstar.cpp , rwstar.h
- item_list() : rwstar.cpp , rwstar.h
- item_put_angle_list() : rwstar.h , rwstar.cpp
- item_put_atom_list() : rwmol_star.cpp
- item_put_chain() : rwmol_star.cpp
- item_put_filament_list() : rwmgSTAR.cpp
- item_put_float() : rwstar.h , rwstar.cpp
- item_put_float_array() : rwstar.cpp , rwstar.h
- item_put_integer() : rwstar.cpp , rwstar.h
- item_put_list() : rwstar.h , rwstar.cpp
- item_put_string() : rwstar.cpp , rwstar.h
- item_put_string_list() : rwstar.h , rwstar.cpp