| Bsoft 2.0.5 Bernard's software package

Here is a list of all file members with links to the files they belong to:

### - r -

- R_ANGX : rwSUPRIM.h
- R_ANGY : rwSUPRIM.h
- R_ANGZ : rwSUPRIM.h
- R_NPROJ : rwSUPRIM.h
- RAD_SAMP : rwSUPRIM.h
- radial_R() : Bimage_polar.cpp
- radius_wrt_sym_axes() : Bimage_polar.cpp
- random_array_gaussian() : random_numbers.h , random_numbers.cpp
- random_array_gaussian_chunk() : random_numbers.cpp
- random_array_logistical() : random_numbers.h , random_numbers.cpp
- random_array_logistical_chunk() : random_numbers.cpp
- random_array_poisson() : random_numbers.h , random_numbers.cpp
- random_array_poisson_chunk() : random_numbers.cpp
- random_array_uniform() : random_numbers.h , random_numbers.cpp
- random_array_uniform_chunk() : random_numbers.cpp
- random_gaussian() : random_numbers.h , random_numbers.cpp
- random_logistical() : random_numbers.h , random_numbers.cpp
- random_poisson() : random_numbers.h , random_numbers.cpp
- random_seed() : random_numbers.h , random_numbers.cpp
- random_symmetric_view() : symmetry.h , symmetry.cpp
- random_view() : View.h , View.cpp
- random_view_error() : View.h , View.cpp
- random_views() : View.h , View.cpp
- randseed() : random_numbers.cpp
- read_atom_prop_star() : rwatomprop.cpp
- read_atom_properties() : rwatomprop.cpp
- read_block() : rwstar.h , rwstar.cpp
- read_field() : rwSER.cpp
- read_gencode_star() : rwgencode.cpp
- read_img() : rwimg.h , rwimg.cpp
- read_imod_fid() : rwmgIMOD.cpp
- read_imod_tlt() : rwmgIMOD.h , btomo.cpp , rwmgIMOD.cpp
- read_imod_xf() : rwmgIMOD.cpp
- read_imod_xyz() : rwmgIMOD.cpp
- read_list() : bpartsel.cpp
- read_loop_items() : rwstar.h , rwstar.cpp
- read_matrix() : rwmatrix.h
- read_md_parameters() : rwmd.h , rwmd.cpp
- read_model() : rwmodel.h , rwmodel.cpp , rwmodel.h
- read_model_bild() : rwmodel_bild.h , rwmodel_bild.cpp
- read_model_chimera() : rwmodel_cmm.h , rwmodel_cmm.cpp
- read_model_molecule() : rwmodel_mol.h , rwmodel_mol.cpp
- read_model_star() : rwmodel_star.h , rwmodel_star.cpp
- read_model_vega() : rwmodel_vega.h , rwmodel_vega.cpp
- read_model_xml() : rwmodel_xml.h , rwmodel_xml.cpp
- read_mol_star() : rwmol_star.h , rwmol_star.cpp
- read_mol_text() : rwmol_text.h , rwmol_text.cpp
- read_molecule() : rwmolecule.h , rwmolecule.cpp
- read_particle() : rwmg.h , rwmg.cpp
- read_particle_xml() : rwmgXML.h
- read_project() : rwmg.h , rwmg.cpp
- read_project_conv() : bmgconvert.cpp
- read_project_crd() : bmgconvert.cpp
- read_project_dat() : bmgconvert.cpp
- read_project_emx() : rwmgEMX.h , rwmgEMX.cpp
- read_project_imod() : rwmgIMOD.h , rwmgIMOD.cpp
- read_project_relion() : rwmgRELION.h , rwmgRELION.cpp
- read_project_serialem() : rwmgSerialEM.h , rwmgSerialEM.cpp
- read_project_star() : rwmgSTAR.h , rwmgSTAR.cpp
- read_project_xml() : rwmgXML.h , rwmgXML.cpp
- read_residue_mat_star() : rwresprop.cpp
- read_residue_prop_star() : rwresprop.cpp
- read_residue_properties() : rwresprop.cpp
- read_rps() : bampweigh.cpp
- read_sf() : rwPIF.cpp
- read_single_item() : rwstar.h , rwstar.cpp
- read_star() : rwstar.h , rwstar.cpp
- read_symat() : rwsymop.h , rwsymop.cpp
- read_symop() : rwsymop.h , rwsymop.cpp
- read_symop_lib() : rwsymop.cpp
- read_symop_star() : rwsymop.cpp
- read_tree() : rwtree.h , rwtree.cpp
- readASCII() : rwASCII.h , rwASCII.cpp
- readBCR() : rwBCR.h , rwBCR.cpp
- readBIORAD() : rwBIORAD.h , rwBIORAD.cpp
- readBRIX() : rwBRIX.h , rwBRIX.cpp
- readBrookhavenSTEM() : rwBrookhavenSTEM.h , rwBrookhavenSTEM.cpp
- readCCP4() : rwCCP4.h , rwCCP4.cpp
- readClustal() : rwClustal.h , rwClustal.cpp
- readDI() : rwDI.h , rwDI.cpp
- readDM() : rwDM.h , rwDM.cpp
- readDSN6() : rwDSN6.h , rwDSN6.cpp
- readDX() : rwDX.h , rwDX.cpp
- readEM() : rwEM.h , rwEM.cpp
- readEMBL() : rwEMBL.h , rwEMBL.cpp
- readFASTA() : rwFASTA.h , rwFASTA.cpp
- readFixedDMHeader() : rwDM.cpp
- readGenBank() : rwGenBank.h , rwGenBank.cpp
- readGOODFORD() : rwGOODFORD.h , rwGOODFORD.cpp
- readGRD() : rwGRD.h , rwGRD.cpp
- readGROMACS() : rwGROMACS.h , rwGROMACS.cpp
- readHKL() : rwHKL.h , rwHKL.cpp
- readIMAGIC() : rwIMAGIC.h , rwIMAGIC.cpp
- readIP() : rwIP.h , rwIP.cpp
- readJPEG() : rwJPEG.h , rwJPEG.cpp
- readKernel() : rwkernel.h , rwkernel.cpp
- readMFF() : rwMFF.h , rwMFF.cpp
- readMIFF() : rwMIFF.h , rwMIFF.cpp
- readModel() : bshow_model.tcl
- readMRC() : rwMRC.h , rwMRC.cpp
- readPDB() : rwPDB.h , rwPDB.cpp
- readPhylip() : rwPhylip.cpp , rwPhylip.h
- readPIC() : rwPIC.h , rwPIC.cpp
- readPIF() : rwPIF.cpp , rwPIF.h
- readPIR() : rwPIR.h , rwPIR.cpp
- readPNG() : rwPNG.cpp , rwPNG.h
- readPNM() : rwPNM.h , rwPNM.cpp
- readRAW() : rwRAW.h , rwRAW.cpp
- readSER() : rwSER.h , rwSER.cpp
- readSitus() : rwSitus.cpp , rwSitus.h
- readSPE() : rwSPE.h , rwSPE.cpp
- readSPIDER() : rwSPIDER.cpp , rwSPIDER.h
- readSUPRIM() : rwSUPRIM.h , rwSUPRIM.cpp
- readTag() : rwDM.cpp
- readTagGroupData() : rwDM.cpp
- readTagGroupWithVersion() : rwDM.cpp
- readTemplate() : bshow_boxes.tcl
- readTextFile() : btext.tcl
- readTGA() : rwTGA.h , rwTGA.cpp
- readTIFF() : rwTIFF.h , rwTIFF.cpp
- readTlt() : bshow_tomo.tcl
- readWAH() : rwWAH.h , rwWAH.cpp
- readXPLOR() : rwXPLOR.cpp , rwXPLOR.h
- readXPLORmap() : rwXPLOR.cpp
- readXPLORsf() : rwXPLOR.cpp
- REAL4_DATA : rwDM.h
- REAL8_DATA : rwDM.h
- rec_ctf() : mg_ctf.cpp
- rec_ctf_prepare() : mg_ctf.cpp
- rec_extract_orient_particles() : mg_pick.cpp
- rec_part_links() : mg_processing.h , mg_processing.cpp
- rec_pick_background() : mg_pick.cpp
- rec_replace_parameters() : bmgtransfer.cpp
- reconfigureMinMax() : bshow_scales.tcl
- reconfigureRangeStep() : bshow_scales.tcl
- reconfigureScales() : bshow_scales.tcl
- reconstruction_add() : mg_processing.cpp , mg_processing.h
- reconstruction_extract_filaments() : mg_extract.h , mg_extract.cpp
- reconstruction_extract_gold() : mg_extract.cpp , mg_extract.h
- reconstruction_extract_particles() : mg_extract.h , mg_extract.cpp
- reconstruction_filaments_to_particles() : mg_extract.h , mg_extract.cpp
- reconstruction_from_starblock() : rwmgSTAR.cpp
- reconstruction_kill() : mg_processing.cpp , mg_processing.h
- reconstruction_refine_subtomo() : mg_subtomo.cpp , mg_subtomo.h
- reconstruction_resolve_file_access() : rwmg.cpp
- reconstruction_search_subtomo() : mg_subtomo.h , mg_subtomo.cpp
- reconstruction_set_part_links() : mg_processing.h , mg_processing.cpp
- reconstruction_to_starblock() : rwmgSTAR.cpp
- reconstruction_update() : mg_processing.cpp , mg_processing.h
- rectangle_edge() : Bimage_edit.cpp
- reference_asymmetric_unit_views() : symmetry.cpp , symmetry.h
- refineMarker() : bshow_tomo.tcl
- refineParticles() : bshow_boxes.tcl
- REFLEX : mg_tags.h
- REFLEX_AMP : mg_tags.h
- REFLEX_FOM : mg_tags.h
- REFLEX_H : mg_tags.h
- REFLEX_K : mg_tags.h
- REFLEX_L : mg_tags.h
- REFLEX_PHI : mg_tags.h
- REFLEX_RADIUS : mg_tags.h
- REFLEX_SIGAMP : mg_tags.h
- REFLEX_SIGPHI : mg_tags.h
- REFLEX_STATUS : mg_tags.h
- REFLEX_X : mg_tags.h
- REFLEX_Y : mg_tags.h
- REFLEX_Z : mg_tags.h
- region_find() : Bimage_segment.cpp
- region_join() : Bimage_segment.cpp
- region_merge_small() : Bimage_segment.cpp
- region_merging() : Bimage_segment.cpp
- region_setup() : Bimage_segment.cpp
- relativePath() : bshow_file.tcl
- relion_to_project() : rwmgRELION.cpp
- remove_item() : linked_list.cpp , linked_list.h
- remove_negative_zeros() : utilities.cpp , utilities.h
- rephase_1D() : sin_gal.cpp
- rephase_orig() : fft_tool.cpp , fft_tool.h
- replace() : bfile.cpp
- replace_a_character() : bfix.cpp
- replace_extension() : string_util.h , string_util.cpp
- replace_item() : linked_list.h , linked_list.cpp
- res_code : seq_util.cpp
- RESCOIL_CODE1 : mol_tags.h
- RESCOIL_POS_A : mol_tags.h
- RESCOIL_POS_B : mol_tags.h
- RESCOIL_POS_C : mol_tags.h
- RESCOIL_POS_D : mol_tags.h
- RESCOIL_POS_E : mol_tags.h
- RESCOIL_POS_F : mol_tags.h
- RESCOIL_POS_G : mol_tags.h
- residue_add() : rwmolecule.h , rwmolecule.cpp
- residue_count() : rwmolecule.cpp , rwmolecule.h
- residue_kill() : rwmolecule.cpp , rwmolecule.h
- residue_matrix_kill() : rwresprop.cpp , rwresprop.h
- residue_type_add() : rwresprop.cpp
- RESMATRIX1_CODE1 : mol_tags.h
- RESMATRIX2_CODE1 : mol_tags.h
- RESMATRIX_SUBSTITUTION : mol_tags.h
- RESPROP_C : mol_tags.h
- RESPROP_CHARGE : mol_tags.h
- RESPROP_CODE1 : mol_tags.h
- RESPROP_CODE3 : mol_tags.h
- RESPROP_CODON : mol_tags.h
- RESPROP_EXTENSION : mol_tags.h
- RESPROP_EXTSTDEV : mol_tags.h
- RESPROP_H : mol_tags.h
- RESPROP_HYDROPHOBICITY : mol_tags.h
- RESPROP_MASS : mol_tags.h
- RESPROP_N : mol_tags.h
- RESPROP_O : mol_tags.h
- RESPROP_S : mol_tags.h
- RESPROP_VOLUME : mol_tags.h
- restore_with_mask() : pocs_tool.cpp
- reverse_list() : linked_list.cpp , linked_list.h
- RGB_DATA : rwDM.h
- RGB_FLOAT64_DATA : rwDM.h
- RGB_UINT16_DATA : rwDM.h
- RGB_UINT8_DATA : rwDM.h
- RGBA_FLOAT32_DATA : rwDM.h
- RGBA_FLOAT64_DATA : rwDM.h
- RGBA_UINT16_DATA : rwDM.h
- RGBA_UINT8_DATA : rwDM.h
- RHO : utilities.h
- RightHanded310 : rwmolecule.h
- RightHandedAlpha : rwmolecule.h
- RightHandedGamma : rwmolecule.h
- RightHandedOmega : rwmolecule.h
- RightHandedPi : rwmolecule.h
- ritoab() : fft_tool.cpp , fft_tool.h
- rotate_mask_filament_particles() : mg_extract.cpp
- ROTGLOB : rwSUPRIM.h
- rotX_cart() : radon_util.cpp , radon_util.h
- rotY_cart() : radon_util.cpp , radon_util.h
- rotZ_cart() : radon_util.cpp , radon_util.h
- ROW_ORG : rwSUPRIM.h