| Bsoft 2.0.5 Bernard's software package

Here is a list of all file members with links to the files they belong to:

### - p -

- PACKED_DATA : rwDM.h
- Pad() : bshow_image.tcl
- padding() : gal_ricoI.cpp
- padImage() : bshow_image.tcl
- parameter_file_path() : string_util.cpp , Bstring.h , string_util.h , Bstring.cpp
- parse_integer_vector() : string_util.h , string_util.cpp
- parse_real_vector() : string_util.h , string_util.cpp
- parseCommand() : brun_panel.tcl
- parseOptionLine() : brun_panel.tcl
- parseUsageLine() : brun_panel.tcl
- part_align() : mg_pick.cpp
- part_consolidate_selection() : mg_particle_select.h , mg_particle_select.cpp
- part_convert_selection() : mg_particle_select.cpp
- part_ctf() : mg_ctf.cpp
- part_delete_deselected() : mg_particle_select.h , mg_particle_select.cpp
- part_deselect() : mg_particle_select.h , mg_particle_select.cpp
- part_deselect_from_list() : mg_particle_select.h , mg_particle_select.cpp
- part_deselect_redundant() : mg_particle_select.h , mg_particle_select.cpp
- part_determine_orientation() : mg_orient.cpp
- part_euler_angle_select() : mg_particle_select.h , mg_particle_select.cpp
- part_fil_dir_stats() : mg_particle_select.cpp
- part_filament_direction() : mg_particle_select.h , mg_particle_select.cpp
- part_find_first() : mg_processing.h , mg_processing.cpp
- part_find_maximum_power() : bmaxpow.cpp
- part_fix_defocus() : mg_particle_select.h , mg_particle_select.cpp
- part_fom() : tcltk_bmg.cpp
- part_fom_defocus_fit() : mg_particle_select.h , mg_particle_select.cpp
- part_fom_defocus_fit_deselect() : mg_particle_select.h , mg_particle_select.cpp
- part_fom_order() : mg_particle_select.h , mg_particle_select.cpp
- part_ft_size() : mg_reconstruct.h , mg_reconstruct.cpp
- part_invert_selection() : mg_particle_select.h , mg_particle_select.cpp
- PART_LOG : mg_processing.h
- part_mask_particles() : mg_pick.cpp
- part_origin_select() : mg_particle_select.h , mg_particle_select.cpp
- part_pick_sym_axis() : mg_pick.cpp
- part_refine_orientation() : mg_refine.cpp
- part_reselect() : mg_particle_select.h , mg_particle_select.cpp
- part_reset_selection() : mg_particle_select.cpp , mg_particle_select.h
- part_select() : tcltk_bmg.cpp
- part_select_best() : mg_particle_select.h , mg_particle_select.cpp
- part_select_best_within_view() : mg_particle_select.h , mg_particle_select.cpp
- part_select_bootstrap() : mg_particle_select.h , mg_particle_select.cpp
- part_select_closest_to_focus() : mg_particle_select.h , mg_particle_select.cpp
- part_select_FOM_avg_std() : mg_particle_select.h , mg_particle_select.cpp
- part_select_FOM_groups() : mg_particle_select.h , mg_particle_select.cpp
- part_select_frames() : mg_particle_select.h , mg_particle_select.cpp
- part_select_furthest_from_focus() : mg_particle_select.h , mg_particle_select.cpp
- part_select_group() : mg_particle_select.h , mg_particle_select.cpp
- part_select_maxsmooth() : mg_particle_select.h , mg_particle_select.cpp
- part_select_micrograph() : mg_particle_select.h , mg_particle_select.cpp
- part_select_percentage() : mg_particle_select.h , mg_particle_select.cpp
- part_select_random() : mg_particle_select.h , mg_particle_select.cpp
- part_select_random_fraction() : mg_particle_select.h , mg_particle_select.cpp
- part_select_random_group() : mg_particle_select.h , mg_particle_select.cpp
- part_select_random_within_view() : mg_particle_select.h , mg_particle_select.cpp
- part_select_series() : mg_particle_select.h , mg_particle_select.cpp
- part_select_sets() : mg_particle_select.h , mg_particle_select.cpp
- part_select_to_group() : mg_particle_select.h , mg_particle_select.cpp
- part_series_comparison() : mg_particle_select.h , mg_particle_select.cpp
- part_series_from_seed() : mg_particle_select.h , mg_particle_select.cpp
- part_set_best_view_in_series() : mg_particle_select.h , mg_particle_select.cpp
- part_set_filament_maps() : mg_particle_select.h , mg_particle_select.cpp
- part_set_first_view_in_series() : mg_particle_select.h , mg_particle_select.cpp
- part_set_FOM() : mg_particle_select.h , mg_particle_select.cpp
- part_set_multi_maps() : mg_particle_select.h , mg_particle_select.cpp
- part_set_selection() : mg_particle_select.h , mg_particle_select.cpp
- part_show_parameter() : mg_processing.cpp
- part_side_view_select() : mg_particle_select.h , mg_particle_select.cpp
- part_single_reconstruction() : mg_reconstruct.cpp
- part_unset_selection() : mg_particle_select.h , mg_particle_select.cpp
- part_view_select() : mg_particle_select.h , mg_particle_select.cpp
- PARTICLE : mg_tags.h
- particle_add() : mg_processing.h , mg_processing.cpp
- particle_array() : mg_processing.h , mg_processing.cpp
- PARTICLE_AST_ANG : mg_tags.h
- PARTICLE_BAD : mg_tags.h
- particle_bad_copy() : mg_processing.cpp
- PARTICLE_BAD_RADIUS : mg_tags.h
- PARTICLE_BAD_X : mg_tags.h
- PARTICLE_BAD_Y : mg_tags.h
- PARTICLE_BAD_Z : mg_tags.h
- particle_best_c5() : bico.cpp
- PARTICLE_BOX_RADIUS : mg_tags.h
- PARTICLE_BOX_RADIUS_X : mg_tags.h
- PARTICLE_BOX_RADIUS_Y : mg_tags.h
- PARTICLE_BOX_RADIUS_Z : mg_tags.h
- PARTICLE_BOX_SIZE : mg_tags.h
- PARTICLE_BOX_SIZE_X : mg_tags.h
- PARTICLE_BOX_SIZE_Y : mg_tags.h
- PARTICLE_BOX_SIZE_Z : mg_tags.h
- PARTICLE_CC : mg_tags.h
- PARTICLE_CC_AVG : mg_tags.h
- particle_cc_opposite_vertices() : bico.cpp
- PARTICLE_CMP_CC : mg_tags.h
- particle_copy() : mg_processing.h , mg_processing.cpp
- particle_count() : mg_processing.h , mg_processing.cpp
- particle_count_selected() : mg_processing.h , mg_processing.cpp
- PARTICLE_COVERAGE : mg_tags.h
- PARTICLE_DEF_DEV : mg_tags.h
- PARTICLE_DEFOCUS : mg_tags.h
- particle_extract() : mg_extract.h , mg_extract.cpp
- PARTICLE_FILE : mg_tags.h
- PARTICLE_FOM : mg_tags.h
- PARTICLE_FOM1 : mg_tags.h
- PARTICLE_FOM2 : mg_tags.h
- PARTICLE_FOM3 : mg_tags.h
- PARTICLE_FOM4 : mg_tags.h
- PARTICLE_FOM5 : mg_tags.h
- PARTICLE_FOM6 : mg_tags.h
- PARTICLE_FOM7 : mg_tags.h
- PARTICLE_FOM8 : mg_tags.h
- PARTICLE_FOM9 : mg_tags.h
- PARTICLE_FOM_AVG : mg_tags.h
- PARTICLE_FOM_CV : mg_tags.h
- PARTICLE_FOM_SNR : mg_tags.h
- PARTICLE_FOM_STD : mg_tags.h
- particle_from_starblock() : rwmgSTAR.cpp
- particle_get_box_size() : mg_img_proc.h , mg_img_proc.cpp
- PARTICLE_GROUP : mg_tags.h
- PARTICLE_HANDA_FOM : mg_tags.h
- PARTICLE_HANDB_FOM : mg_tags.h
- PARTICLE_ID : mg_tags.h
- particle_kill() : mg_processing.h , mg_processing.cpp
- PARTICLE_MAGNIF : mg_tags.h
- PARTICLE_MG_ID : mg_tags.h
- PARTICLE_MG_X : mg_tags.h
- PARTICLE_MG_Y : mg_tags.h
- PARTICLE_MG_Z : mg_tags.h
- PARTICLE_NUMBER : mg_tags.h
- PARTICLE_OMEGA : mg_tags.h
- PARTICLE_ORIGIN_X : mg_tags.h
- PARTICLE_ORIGIN_Y : mg_tags.h
- PARTICLE_ORIGIN_Z : mg_tags.h
- PARTICLE_PFT_CC : mg_tags.h
- PARTICLE_PHI : mg_tags.h
- PARTICLE_PIXEL : mg_tags.h
- PARTICLE_PRJ_CC : mg_tags.h
- PARTICLE_PSI : mg_tags.h
- particle_random_view() : mg_random.cpp
- particle_read_img() : mg_img_proc.h , mg_img_proc.cpp
- particle_reconstruct() : mg_reconstruct.h , mg_reconstruct.cpp
- PARTICLE_RFACTORAB : mg_tags.h
- PARTICLE_SELECT : mg_tags.h
- particle_setup_filenames() : mg_extract.h , mg_extract.cpp
- PARTICLE_THETA : mg_tags.h
- particle_to_starblock() : rwmgSTAR.cpp
- particle_tomo_reconstruct() : mg_tomo_rec.cpp
- particle_update() : mg_processing.h , mg_processing.cpp
- PARTICLE_VIEW_ANGLE : mg_tags.h
- PARTICLE_VIEW_X : mg_tags.h
- PARTICLE_VIEW_Y : mg_tags.h
- PARTICLE_VIEW_Z : mg_tags.h
- particle_worst_opposite_vertex() : bico.cpp
- particle_worst_vertex() : bico.cpp
- particle_write_img() : mg_img_proc.h , mg_img_proc.cpp
- PARTICLE_X : mg_tags.h
- PARTICLE_X_ORIGIN : mg_tags.h
- PARTICLE_Y : mg_tags.h
- PARTICLE_Y_ORIGIN : mg_tags.h
- PARTICLE_Z : mg_tags.h
- PARTICLE_Z_ORIGIN : mg_tags.h
- particleReconstruct() : bshow_boxes.tcl
- Particles() : bshow_boxes.tcl
- particles_from_peaks() : mg_pick.h , mg_pick.cpp
- particles_mask() : mg_particles.cpp
- particles_pick_cc() : mg_pick.h , mg_pick.cpp
- particles_pick_var() : mg_pick.h , mg_pick.cpp
- partition() : math_util.h , math_util.cpp
- path_update() : mg_processing.cpp
- pdb_matrices_from_particles() : jviews.cpp
- PHI_BP : rwSUPRIM.h
- PIF_SCALE : rwPIF.cpp
- PIFscale : rwPIF.cpp
- PIFSIZE : rwPIF.h
- planb : bico.cpp
- PLANCK : utilities.h
- planf : bico.cpp
- plot_calculate_resolution() : mg_tomo_resol.cpp
- plot_curve() : ps_plot.h , ps_plot.cpp
- plot_resolution() : mg_tomo_resol.cpp
- plot_tilt_resolution() : mg_tomo_resol.h , mg_tomo_resol.cpp
- plotGraph() : bshow_graph.tcl
- pnm_next_item() : rwPNM.cpp
- pnm_read_data() : rwPNM.cpp
- point_on_helix_axis() : mol_alpha.h , mol_alpha.cpp
- point_spread() : ps_ctf_plot.cpp
- poke_value() : bfile.cpp
- polcar_f() : gal_ricoI.cpp
- polcart_fourier() : gal_ricoI.cpp
- poly_get_connectivity() : model_poly.cpp
- poly_list_kill() : rwmodel.h , rwmodel.cpp
- polygon_add() : model_poly_spiral.cpp
- Polyproline : rwmolecule.h
- POTPREFAC : molecule_to_map.h
- PowerSpectrum() : bshow_image.tcl
- ppx_check() : rwmg.h , rwmg.cpp
- ppx_filename() : rwmg.h , rwmg.cpp
- prime_factors() : math_util.h , math_util.cpp
- principal_axes() : Matrix.h , matrix.cpp
- programInterface() : brun_panel.tcl
- project : bshow.cpp , tcltk_bmg.cpp , tcltk_bmodel.cpp
- PROJECT : mg_tags.h
- project_add_origins_to_coords() : mg_processing.h , mg_processing.cpp
- project_align_frames() : mg_align.h , mg_align.cpp
- project_align_particles() : mg_particles.h , mg_particles.cpp
- project_align_series() : mg_align.h , mg_align.cpp
- project_apply_distortions() : mg_multislice.h , mg_multislice.cpp
- project_apply_map_magnifications() : mg_processing.h , mg_processing.cpp
- project_assign_special_vertex_orientations() : bico.cpp
- project_back_projection() : mg_reconstruct.h , mg_reconstruct.cpp
- project_bin_micrographs() : mg_img_proc.h , mg_img_proc.cpp
- project_calculate_angles() : mg_tomography.h , mg_tomography.cpp
- project_calculate_model() : mg_tomography.h , mg_tomography.cpp
- project_center_filaments() : mg_helix.h , mg_helix.cpp
- project_center_particles() : mg_particles.h , mg_particles.cpp
- project_change_pixel_size() : mg_img_proc.h , mg_img_proc.cpp
- project_check() : rwmg.cpp
- project_check_markers() : mg_tomography.h , mg_tomography.cpp
- project_check_particles() : mg_img_proc.h , mg_img_proc.cpp
- project_check_same_number_particles() : mg_multiple.cpp
- project_clear_extraneous_areas() : mg_tomography.h , mg_tomography.cpp
- project_compare_particles() : mg_particles.h , mg_particles.cpp
- project_configure_for_reconstruction() : mg_reconstruct.h , mg_reconstruct.cpp
- project_count_fields() : mg_processing.h , mg_processing.cpp
- project_count_markers() : mg_tomography.h , mg_tomography.cpp
- project_count_mg_filament_nodes() : mg_processing.h , mg_processing.cpp
- project_count_mg_filaments() : mg_processing.h , mg_processing.cpp
- project_count_mg_groups() : mg_processing.h , mg_processing.cpp
- project_count_mg_part_selected() : mg_processing.h , mg_processing.cpp
- project_count_mg_particles() : mg_processing.h , mg_processing.cpp
- project_count_mg_selected() : mg_processing.h , mg_processing.cpp
- project_count_micrographs() : mg_processing.h , mg_processing.cpp
- project_count_rec_filament_nodes() : mg_processing.h , mg_processing.cpp
- project_count_rec_filaments() : mg_processing.h , mg_processing.cpp
- project_count_rec_groups() : mg_processing.h , mg_processing.cpp
- project_count_rec_part_selected() : mg_processing.h , mg_processing.cpp
- project_count_rec_particles() : mg_processing.h , mg_processing.cpp
- project_count_rec_selected() : mg_processing.h , mg_processing.cpp
- project_count_reconstructions() : mg_processing.h , mg_processing.cpp
- project_create() : mg_processing.h , mg_processing.cpp
- project_create_from_image() : mg_img_proc.h , mg_img_proc.cpp
- project_create_from_images() : mg_img_proc.h , mg_img_proc.cpp
- project_ctf() : mg_ctf.h , mg_ctf.cpp
- project_ctf_average() : mg_ctf.h , mg_ctf.cpp
- project_ctf_prepare() : mg_ctf.h , mg_ctf.cpp
- project_CTF_to_part() : mg_ctf.h , mg_ctf.cpp
- project_delesect_edge_particles() : mg_img_proc.h , mg_img_proc.cpp
- project_delete_markers() : mg_tomography.h , mg_tomography.cpp
- project_deselect_markers() : mg_tomography.h , mg_tomography.cpp
- project_determine_orientations() : mg_orient.h , mg_orient.cpp
- project_determine_origins() : mg_orient.h , mg_orient.cpp
- project_display_counts() : rwmg.cpp
- project_divide() : mg_processing.h , mg_processing.cpp
- project_dual_zcompare() : mg_tomo_track.h , mg_tomo_track.cpp
- project_dump() : mg_processing.h , mg_processing.cpp
- project_equal_mg_part_files() : mg_processing.h , mg_processing.cpp
- project_erase_markers() : mg_tomography.h , mg_tomography.cpp
- project_extract_filaments() : mg_extract.h , mg_extract.cpp
- project_extract_orient_particles() : mg_pick.h , mg_pick.cpp
- project_extract_particles() : mg_extract.h , mg_extract.cpp
- project_filament_density() : mg_helix.h , mg_helix.cpp
- project_filament_powerspectrum() : mg_helix.h , mg_helix.cpp
- project_filaments_to_particles() : mg_extract.h , mg_extract.cpp
- project_find_markers() : mg_tomography.h , mg_tomography.cpp
- project_find_part_centers_in_mgs() : mg_particles.h , mg_particles.cpp
- project_find_particle_centers() : mg_particles.h , mg_particles.cpp
- project_find_tilt_axis() : mg_tomo_track.h , mg_tomo_track.cpp
- project_fix_markers() : mg_tomography.h , mg_tomography.cpp
- project_flip_origins() : mg_processing.h , mg_processing.cpp
- project_flip_particle_coordinates() : mg_img_proc.h , mg_img_proc.cpp
- project_fom_order() : mg_particle_select.h , mg_particle_select.cpp
- project_fourier_reconstruction_slab() : mg_tomo_rec.h , mg_tomo_rec.cpp
- project_generate() : mg_multislice.h , mg_multislice.cpp
- project_generate_asu() : mg_multislice.h , mg_multislice.cpp
- project_generate_image() : mg_multislice.h , mg_multislice.cpp
- project_generate_markers() : mg_tomography.h , mg_tomography.cpp
- project_generate_potential() : mg_multislice.h , mg_multislice.cpp
- project_get_filenames() : bmapdist.cpp
- project_get_handedness() : mg_hand.cpp , mg_hand.h
- project_get_part_box_size() : mg_img_proc.h , mg_img_proc.cpp
- project_ico_best_c5() : bico.cpp
- project_ico_opposite_vertex() : bico.cpp
- project_ico_worst_vertex() : bico.cpp
- project_init() : mg_processing.h , mg_processing.cpp
- project_invert_matrices() : mg_tomography.h , mg_tomography.cpp
- project_invert_tilt_axis() : mg_tomography.h , mg_tomography.cpp
- project_kill() : mg_processing.h , mg_processing.cpp
- project_lambda() : mg_tomography.h , mg_tomography.cpp
- project_marker_in_particle() : mg_marker.h , mg_marker.cpp
- project_marker_in_particle_image() : mg_marker.h , mg_marker.cpp
- project_marker_lists() : mg_marker.h , mg_marker.cpp
- project_marker_rotation_axis() : mg_tomography.h , mg_tomography.cpp
- project_mask_filament_particles() : mg_extract.h , mg_extract.cpp
- project_mask_particles() : mg_particles.h , mg_particles.cpp
- project_mass_normalize() : mg_tomography.h , mg_tomography.cpp
- project_maximum_power() : bmaxpow.cpp
- project_maximum_selection() : mg_processing.cpp , mg_processing.h
- project_merge_CTF_parameters() : mg_ctf.h , mg_ctf.cpp
- project_merge_part_parameters() : mg_processing.h , mg_processing.cpp
- project_merge_rec_markers() : mg_tomography.h , mg_tomography.cpp
- project_mg_exclude() : mg_tomography.cpp , mg_tomography.h
- project_mg_marker_select() : mg_tomography.h , mg_tomography.cpp
- project_mg_particle_array() : mg_processing.cpp , mg_processing.h
- project_mg_select() : mg_tomography.h , mg_tomography.cpp
- project_mg_tilt_to_matrix() : mg_tomography.cpp , mg_tomography.h
- project_micrograph_array() : mg_processing.h , mg_processing.cpp
- project_missing_mask() : mg_tomo_rec.h , mg_tomo_rec.cpp
- project_model_consolidate() : brecmod.cpp
- project_model_generate() : brecmod.cpp
- project_modify_parameters() : bmgconvert.cpp
- project_multi_add() : mg_multiple.h , mg_multiple.cpp
- project_multi_merge() : mg_multiple.h , mg_multiple.cpp
- project_multi_select_best_FOM() : mg_multiple.h , mg_multiple.cpp
- project_multi_select_low_difference() : mg_multiple.h , mg_multiple.cpp
- project_multi_select_low_rmsd() : mg_multiple.cpp , mg_multiple.h
- project_multi_select_low_variance() : mg_multiple.h , mg_multiple.cpp
- project_multi_selection_compare() : mg_multiple.h , mg_multiple.cpp
- project_multi_selection_stats() : mg_multiple.h , mg_multiple.cpp
- project_part_from_model() : bmod2part.cpp
- project_pick_background() : mg_pick.h , mg_pick.cpp
- project_pick_particles() : mg_pick.h , mg_pick.cpp , mg_pick.h
- project_pick_sym_axis() : mg_pick.h , mg_pick.cpp
- project_plot_ctf() : mg_ctf.h , mg_ctf.cpp
- project_powerspectrum_average() : mg_ctf.h , mg_ctf.cpp
- project_prepare_2D_references() : mg_orient.h , mg_orient.cpp
- project_processing() : tcltk_bmg.cpp , tcltk_bmg.h
- project_random_defocus() : mg_random.h , mg_random.cpp
- project_random_helical_views() : mg_random.h , mg_random.cpp
- project_random_magnification() : mg_random.h , mg_random.cpp
- project_random_origins() : mg_random.h , mg_random.cpp
- project_random_symmetry_related_views() : mg_random.h , mg_random.cpp
- project_random_views() : mg_random.h , mg_random.cpp
- project_rec_particle_array() : mg_processing.h , mg_processing.cpp
- project_rec_select() : bmapdist.cpp
- project_reconstruct_2D() : mg_reconstruct.cpp , mg_reconstruct.h
- project_reconstruct_2D_fast() : mg_reconstruct.h , mg_reconstruct.cpp
- project_reconstruct_3D() : mg_reconstruct.h , mg_reconstruct.cpp
- project_reconstruction_partlist() : mg_reconstruct.h , mg_reconstruct.cpp
- project_refine() : mg_tomo_track.h , mg_tomo_track.cpp
- project_refine_markers() : mg_tomo_track.cpp , mg_tomo_track.h
- project_refine_one_marker() : mg_tomo_track.h , mg_tomo_track.cpp
- project_refine_orientations() : mg_refine.cpp , mg_refine.h
- project_refine_z() : mg_tomo_track.cpp , mg_tomo_track.h
- project_renumber_markers() : mg_tomography.h , mg_tomography.cpp
- project_renumber_particles() : mg_processing.cpp , mg_processing.h
- project_replace_parameters() : bmgtransfer.cpp
- project_reset_origins() : mg_img_proc.h , mg_img_proc.cpp
- project_resolve_file_access() : rwmg.cpp
- project_revert_filenames() : mg_processing.cpp , mg_processing.h
- project_rotate_mask_filament_particles() : mg_extract.cpp , mg_extract.h
- project_rotate_particle_views() : mg_processing.h , mg_processing.cpp
- project_scale_box() : mg_img_proc.cpp
- project_select_field() : mg_processing.h , mg_processing.cpp
- project_select_micrograph() : mg_processing.h , mg_processing.cpp
- project_set_alpha() : mg_ctf.h , mg_ctf.cpp
- project_set_amp_shift() : mg_ctf.h , mg_ctf.cpp
- project_set_astigmatism() : mg_ctf.h , mg_ctf.cpp
- project_set_baseline() : mg_ctf.h , mg_ctf.cpp
- project_set_baseline_type() : mg_ctf.h , mg_ctf.cpp
- project_set_coherence_envelope() : mg_ctf.h , mg_ctf.cpp
- project_set_Cs() : mg_ctf.h , mg_ctf.cpp
- project_set_defocus() : mg_ctf.h , mg_ctf.cpp
- project_set_dose() : mg_processing.h , mg_processing.cpp
- project_set_envelope() : mg_ctf.h , mg_ctf.cpp
- project_set_envelope_type() : mg_ctf.h , mg_ctf.cpp
- project_set_field_id() : mg_processing.h , mg_processing.cpp
- project_set_filament_path() : mg_processing.h , mg_processing.cpp
- project_set_frame_path() : mg_processing.h , mg_processing.cpp
- project_set_magnification() : mg_processing.h , mg_processing.cpp
- project_set_marker_radius() : mg_tomography.h , mg_tomography.cpp
- project_set_micrograph_origins() : mg_processing.h , mg_processing.cpp
- project_set_micrograph_path() : mg_processing.h , mg_processing.cpp
- project_set_nominal_mg_origins() : mg_img_proc.h , mg_img_proc.cpp
- project_set_part_img_origins() : mg_img_proc.h , mg_img_proc.cpp
- project_set_part_links() : mg_processing.h , mg_processing.cpp
- project_set_particle_asu_views() : mg_processing.cpp , mg_processing.h
- project_set_particle_box_size() : mg_processing.cpp , mg_processing.h , mg_processing.cpp
- project_set_particle_centers() : mg_particles.h , mg_particles.cpp
- project_set_particle_defocus_from_tilt() : mg_particles.h , mg_particles.cpp
- project_set_particle_origins() : mg_processing.h , mg_processing.cpp
- project_set_particle_path() : mg_processing.h , mg_processing.cpp
- project_set_pixel_size() : mg_processing.h , mg_processing.cpp
- project_set_powerspectrum_path() : mg_processing.h , mg_processing.cpp
- project_set_reconstruction_size() : mg_reconstruct.cpp , mg_reconstruct.h
- project_set_scan_sampling() : mg_processing.h , mg_processing.cpp
- project_set_selection() : bmapdist.cpp
- project_set_tilt() : mg_processing.cpp , mg_processing.h
- project_set_tilt_angles() : mg_tomography.h , mg_tomography.cpp
- project_set_tilt_axis() : mg_tomography.cpp , mg_tomography.h
- project_set_views_from_images() : mg_img_proc.h , mg_img_proc.cpp
- project_set_views_in_images() : mg_img_proc.cpp , mg_img_proc.h
- project_set_volts() : mg_ctf.cpp , mg_ctf.h
- project_show_class_averages() : mg_processing.h , mg_processing.cpp
- project_show_errors() : mg_tomography.h , mg_tomography.cpp
- project_show_fom_histogram() : mg_processing.cpp , mg_processing.h
- project_show_hierarchy() : mg_processing.h , mg_processing.cpp
- project_show_mag_histogram() : mg_processing.h , mg_processing.cpp
- project_show_markers() : mg_tomography.h , mg_tomography.cpp
- project_show_parameter() : mg_processing.h , mg_processing.cpp
- project_show_selected() : mg_processing.cpp , mg_processing.h
- project_show_selected_parameters() : mg_processing.h , mg_processing.cpp
- project_show_selection_numbers() : mg_processing.h , mg_processing.cpp
- project_single_particle_reconstruction() : mg_reconstruct.h , mg_reconstruct.cpp
- project_sort_by_tilt() : mg_processing.h , mg_processing.cpp
- project_sort_markers_by_id() : mg_tomography.h , mg_tomography.cpp
- project_split_field_write() : rwmg.h , rwmg.cpp
- project_split_particles() : rwmgRELION.h , rwmgRELION.cpp
- project_split_write() : rwmg.h , rwmg.cpp
- project_ssnr() : mg_align.h , mg_align.cpp
- project_thickness() : mg_tomography.cpp , mg_tomography.h
- project_thickness_to_lambda_ratio() : mg_tomography.cpp , mg_tomography.h
- project_tilt_from_particle_defocus() : mg_particles.cpp , mg_particles.h
- project_to_relion() : rwmgRELION.cpp
- project_to_star() : rwmgSTAR.cpp
- project_tomo_align() : mg_align.cpp , mg_align.h
- project_tomo_errors() : mg_tomography.cpp , mg_tomography.h
- project_tomo_particle_resolution() : mg_tomo_resol.h , mg_tomo_resol.cpp
- project_tomo_reconstruct() : mg_tomo_rec.cpp , mg_tomo_rec.h
- project_tomo_reconstruct_particles() : mg_tomo_rec.cpp , mg_tomo_rec.h
- project_tomo_residuals() : mg_tomography.cpp , mg_tomography.h
- project_tomo_resolution() : mg_tomo_resol.h , mg_tomo_resol.cpp
- project_track_markers() : mg_tomo_track.cpp , mg_tomo_track.h
- project_track_markers_dual() : mg_tomo_track.h , mg_tomo_track.cpp
- project_transfer_seed() : mg_tomo_track.h , mg_tomo_track.cpp
- project_transform_dual() : mg_tomo_track.h , mg_tomo_track.cpp
- project_trim_class_averages() : mg_img_proc.h , mg_img_proc.cpp
- project_update() : mg_processing.h , mg_processing.cpp
- project_update_comment() : rwmg.cpp , rwmg.h
- project_update_first_zero() : mg_ctf.cpp , mg_ctf.h
- project_write_aligned_averages() : mg_align.h , mg_align.cpp
- project_write_aligned_images() : mg_align.h , mg_align.cpp
- project_write_average_frames() : mg_align.h , mg_align.cpp
- project_write_particle_classes() : mg_img_proc.cpp , mg_img_proc.h
- ps_astigmatism_plot() : ps_micrograph.cpp , ps_micrograph.h
- ps_class_average_fom() : ps_micrograph.cpp , ps_micrograph.h
- ps_close() : ps_plot.cpp , ps_plot.h
- ps_ctf_defocus_zeroes() : ps_ctf_plot.cpp , ps_ctf_plot.h
- ps_ctf_plot() : ps_ctf_plot.cpp , ps_ctf_plot.h
- ps_defocus_histogram() : ps_micrograph.h , ps_micrograph.cpp
- ps_draw_node() : ps_tree.h , ps_tree.cpp
- ps_draw_tree() : ps_tree.h , ps_tree.cpp
- ps_dual_zcompare() : ps_micrograph.cpp , ps_micrograph.h
- ps_graph() : ps_plot.cpp , ps_plot.h
- ps_marker_errors() : ps_micrograph.h , ps_marker.cpp , ps_micrograph.cpp , ps_marker.h
- ps_marker_match() : ps_marker.h , ps_marker.cpp
- ps_mg_particle_positions() : ps_micrograph.cpp , ps_micrograph.h
- ps_model_fom_histogram() : ps_model.cpp , ps_model.h
- ps_model_occupancy() : ps_model.h , ps_model.cpp
- ps_model_symmetry_views() : ps_model.cpp , ps_model.h
- ps_model_views() : ps_model.h , ps_model.cpp
- ps_open_and_init() : ps_plot.cpp , ps_plot.h , ps_plot.cpp , ps_plot.h
- ps_origins() : ps_micrograph.cpp , ps_micrograph.h , ps_micrograph.cpp
- ps_part_fom_histogram() : ps_micrograph.h , ps_micrograph.cpp
- ps_particle_views_origins() : ps_micrograph.cpp , ps_micrograph.h
- ps_phi_theta_plot() : ps_views.h , ps_views.cpp
- ps_plot() : ps_plot.h , ps_plot.cpp
- ps_point_spread() : ps_ctf_plot.h , ps_ctf_plot.cpp
- ps_read() : ps_plot.h , ps_plot.cpp
- ps_scale() : ps_plot.h , ps_plot.cpp
- ps_seq_hydrophob() : ps_sequence.h , ps_sequence.cpp
- ps_seq_info() : ps_sequence.cpp , ps_sequence.h
- ps_seq_periodicity() : ps_sequence.cpp
- ps_seq_representation() : ps_sequence.cpp
- ps_sets_of_views() : ps_views.cpp , ps_views.h
- ps_show_ctf_fit() : ps_ctf_plot.cpp
- ps_show_ctf_param() : ps_ctf_plot.cpp , ps_ctf_plot.h
- ps_views() : ps_views.cpp , ps_views.h , ps_views.cpp , ps_views.h
- PSI_BP : rwSUPRIM.h