| Bsoft 2.0.5 Bernard's software package

mol Directory Reference

## Files
file | mol_alpha.cpp [code]
| Functions to make and analyze alpha helices.
file | mol_bonds.cpp [code]
| Functions for molecular dynamics.
file | mol_compare.cpp [code]
| Library routines used to compare sets of atomic coordinates.
file | mol_edit.cpp [code]
| Library routines used for atomic coordinates.
file | mol_map_energy.cpp [code]
| Functions to calculate estimates of the fitting of molecules to maps.
file | mol_md.cpp [code]
| Functions for molecular dynamics.
file | mol_monte.cpp [code]
| Functions for a monte carlo metroplis algorithm to energy minimize molecular positions.
file | mol_param.cpp [code]
| Functions to extract parameters from coordinate files.
file | mol_select.cpp [code]
| Library routines to select atomic coordinates.
file | mol_symmetry.cpp [code]
| Library routines used for symmetry operations on atomic coordinates.
file | mol_transform.cpp [code]
| Library routines used for atomic coordinate transformations.
file | mol_util.cpp [code]
| Library routines used for atomic coordinates.
file | mol_water.cpp [code]
| Generating and managing water.
file | molecule_to_map.cpp [code]
| Functions to calculate a 3D map from atomic coordinates.
file | seq_align.cpp [code]
| Library routines to generate and analyze dot plots.
file | seq_analysis.cpp [code]
| Analysis of protein sequences.
file | seq_util.cpp [code]
| Sequence utility functions.