| Bsoft 2.0.5 Bernard's software package

Macros
mol_tags.h File Reference

All STAR file format tags for molecules and molecular parameters. More...

Go to the source code of this file.

## Macros
#define | CELL_A "cell.length_a"
#define | CELL_B "cell.length_b"
#define | CELL_C "cell.length_c"
#define | CELL_ALPHA "cell.angle_alpha"
#define | CELL_BETA "cell.angle_beta"
#define | CELL_GAMMA "cell.angle_gamma"
#define | ATOM_TYPE_SYMBOL "atom_type.symbol"
#define | ATOM_TYPE_NUMBER "atom_type.atom_number"
#define | ATOM_TYPE_OXIDATION "atom_type.oxidation_number"
#define | ATOM_TYPE_MASS "atom_type.mass"
#define | ATOM_TYPE_RADIUS_BOND "atom_type.radius_bond"
#define | ATOM_TYPE_RADIUS_VDW "atom_type.radius_contact"
#define | ATOM_TYPE_SCAT_A1 "atom_type.scat_Cromer_Mann_a1"
#define | ATOM_TYPE_SCAT_A2 "atom_type.scat_Cromer_Mann_a2"
#define | ATOM_TYPE_SCAT_A3 "atom_type.scat_Cromer_Mann_a3"
#define | ATOM_TYPE_SCAT_A4 "atom_type.scat_Cromer_Mann_a4"
#define | ATOM_TYPE_SCAT_A5 "atom_type.scat_Cromer_Mann_a5"
#define | ATOM_TYPE_SCAT_B1 "atom_type.scat_Cromer_Mann_b1"
#define | ATOM_TYPE_SCAT_B2 "atom_type.scat_Cromer_Mann_b2"
#define | ATOM_TYPE_SCAT_B3 "atom_type.scat_Cromer_Mann_b3"
#define | ATOM_TYPE_SCAT_B4 "atom_type.scat_Cromer_Mann_b4"
#define | ATOM_TYPE_SCAT_B5 "atom_type.scat_Cromer_Mann_b5"
#define | ATOM_TYPE_SCAT_C "atom_type.scat_Cromer_Mann_c"
#define | BOND_RULE_SYMBOL "bond_rule.symbol"
#define | BOND_RULE_BONDS "bond_rule.bonds"
#define | BOND_TYPE_SYMBOL1 "bond_type.symbol1"
#define | BOND_TYPE_SYMBOL2 "bond_type.symbol2"
#define | BOND_TYPE_LENGTH "bond_type.length"
#define | BOND_TYPE_VDWDIST "bond_type.VdW_distance"
#define | ANGLE_TYPE_SYMBOL1 "angle_type.symbol1"
#define | ANGLE_TYPE_SYMBOL2 "angle_type.symbol2"
#define | ANGLE_TYPE_SYMBOL3 "angle_type.symbol3"
#define | ANGLE_TYPE_ANGLE "angle_type.angle"
#define | ATOM_PDB "atom_site.group_PDB"
#define | ATOM_RESNUMBER "atom_site.label_seq_id"
#define | ATOM_RESINSERT "atom_site.pdbx_PDB_ins_code"
#define | ATOM_NUMBER "atom_site.id"
#define | ATOM_SEGMENT "atom_site.auth_asym_id"
#define | ATOM_LABEL "atom_site.group_PDB"
#define | ATOM_SYMBOL "atom_site.type_symbol"
#define | ATOM_TOPTYPE "atom_site.label_atom_id"
#define | ATOM_RESIDUE "atom_site.label_comp_id"
#define | ATOM_CHAIN "atom_site.label_asym_id"
#define | ATOM_ENTITY "atom_site.label_entity_id"
#define | ATOM_X "atom_site.Cartn_x"
#define | ATOM_Y "atom_site.Cartn_y"
#define | ATOM_Z "atom_site.Cartn_z"
#define | ATOM_FRACT_X "atom_site.fract_x"
#define | ATOM_FRACT_Y "atom_site.fract_y"
#define | ATOM_FRACT_Z "atom_site.fract_z"
#define | ATOM_OCCUPANCY "atom_site.occupancy"
#define | ATOM_BFACTOR "atom_site.B_iso_or_equiv"
#define | ATOM_CHARGE "atom_site.charge"
#define | ATOM_FOOTNOTE_ID "atom_site.footnote_id"
#define | RESPROP_CODON "residue_property.codon"
#define | RESPROP_CODE1 "residue_property.code1"
#define | RESPROP_CODE3 "residue_property.code3"
#define | RESPROP_MASS "residue_property.mass"
#define | RESPROP_VOLUME "residue_property.volume"
#define | RESPROP_EXTENSION "residue_property.extension"
#define | RESPROP_EXTSTDEV "residue_property.extstdev"
#define | RESPROP_HYDROPHOBICITY "residue_property.hydrophobicity"
#define | RESPROP_CHARGE "residue_property.charge"
#define | RESPROP_H "residue_property.H"
#define | RESPROP_C "residue_property.C"
#define | RESPROP_N "residue_property.N"
#define | RESPROP_O "residue_property.O"
#define | RESPROP_S "residue_property.S"
#define | RESMATRIX1_CODE1 "residue1_matrix.code1"
#define | RESMATRIX2_CODE1 "residue2_matrix.code1"
#define | RESMATRIX_SUBSTITUTION "residue_matrix.substitution"
#define | RESCOIL_CODE1 "residue_coil.code1"
#define | RESCOIL_POS_A "residue_coil.position_a"
#define | RESCOIL_POS_B "residue_coil.position_b"
#define | RESCOIL_POS_C "residue_coil.position_c"
#define | RESCOIL_POS_D "residue_coil.position_d"
#define | RESCOIL_POS_E "residue_coil.position_e"
#define | RESCOIL_POS_F "residue_coil.position_f"
#define | RESCOIL_POS_G "residue_coil.position_g"
#define | MOLECULE_NAME "molecule.name"
#define | MOLECULE_LENGTH "molecule.length"
#define | MOLECULE_SEQUENCE "molecule.sequence"
#define | MOLECULE_FILENAME "molecule.file_name"
#define | MOLECULE_MAP_FILE "molecule.map_file_name"
#define | MOLECULE_MAP_NUMBER "molecule.map_number"
#define | MOLECULE_X "molecule.x"
#define | MOLECULE_Y "molecule.y"
#define | MOLECULE_Z "molecule.z"
#define | MOLECULE_VIEW_X "molecule.view_x"
#define | MOLECULE_VIEW_Y "molecule.view_y"
#define | MOLECULE_VIEW_Z "molecule.view_z"
#define | MOLECULE_VIEW_ANGLE "molecule.view_angle"
#define | MOLECULE_FOM "molecule.fom"
#define | MOLECULE_SELECT "molecule.select"

## Detailed Description

All STAR file format tags for molecules and molecular parameters.

Author
  Bernard Heymann

Date
  Created: 20000419
  Modified: 20190603

Definition in file mol_tags.h.

## Macro Definition Documentation

## ◆ ANGLE_TYPE_ANGLE

#define ANGLE_TYPE_ANGLE "angle_type.angle"

Definition at line 54 of file mol_tags.h.

## ◆ ANGLE_TYPE_SYMBOL1

#define ANGLE_TYPE_SYMBOL1 "angle_type.symbol1"

Definition at line 51 of file mol_tags.h.

## ◆ ANGLE_TYPE_SYMBOL2

#define ANGLE_TYPE_SYMBOL2 "angle_type.symbol2"

Definition at line 52 of file mol_tags.h.

## ◆ ANGLE_TYPE_SYMBOL3

#define ANGLE_TYPE_SYMBOL3 "angle_type.symbol3"

Definition at line 53 of file mol_tags.h.

## ◆ ATOM_BFACTOR

#define ATOM_BFACTOR "atom_site.B_iso_or_equiv"

Definition at line 75 of file mol_tags.h.

## ◆ ATOM_CHAIN

#define ATOM_CHAIN "atom_site.label_asym_id"

Definition at line 66 of file mol_tags.h.

## ◆ ATOM_CHARGE

#define ATOM_CHARGE "atom_site.charge"

Definition at line 76 of file mol_tags.h.

## ◆ ATOM_ENTITY

#define ATOM_ENTITY "atom_site.label_entity_id"

Definition at line 67 of file mol_tags.h.

## ◆ ATOM_FOOTNOTE_ID

#define ATOM_FOOTNOTE_ID "atom_site.footnote_id"

Definition at line 77 of file mol_tags.h.

## ◆ ATOM_FRACT_X

#define ATOM_FRACT_X "atom_site.fract_x"

Definition at line 71 of file mol_tags.h.

## ◆ ATOM_FRACT_Y

#define ATOM_FRACT_Y "atom_site.fract_y"

Definition at line 72 of file mol_tags.h.

## ◆ ATOM_FRACT_Z

#define ATOM_FRACT_Z "atom_site.fract_z"

Definition at line 73 of file mol_tags.h.

## ◆ ATOM_LABEL

#define ATOM_LABEL "atom_site.group_PDB"

Definition at line 62 of file mol_tags.h.

## ◆ ATOM_NUMBER

#define ATOM_NUMBER "atom_site.id"

Definition at line 60 of file mol_tags.h.

## ◆ ATOM_OCCUPANCY

#define ATOM_OCCUPANCY "atom_site.occupancy"

Definition at line 74 of file mol_tags.h.

## ◆ ATOM_PDB

#define ATOM_PDB "atom_site.group_PDB"

Definition at line 57 of file mol_tags.h.

## ◆ ATOM_RESIDUE

#define ATOM_RESIDUE "atom_site.label_comp_id"

Definition at line 65 of file mol_tags.h.

## ◆ ATOM_RESINSERT

#define ATOM_RESINSERT "atom_site.pdbx_PDB_ins_code"

Definition at line 59 of file mol_tags.h.

## ◆ ATOM_RESNUMBER

#define ATOM_RESNUMBER "atom_site.label_seq_id"

Definition at line 58 of file mol_tags.h.

## ◆ ATOM_SEGMENT

#define ATOM_SEGMENT "atom_site.auth_asym_id"

Definition at line 61 of file mol_tags.h.

## ◆ ATOM_SYMBOL

#define ATOM_SYMBOL "atom_site.type_symbol"

Definition at line 63 of file mol_tags.h.

## ◆ ATOM_TOPTYPE

#define ATOM_TOPTYPE "atom_site.label_atom_id"

Definition at line 64 of file mol_tags.h.

## ◆ ATOM_TYPE_MASS

#define ATOM_TYPE_MASS "atom_type.mass"

Definition at line 25 of file mol_tags.h.

## ◆ ATOM_TYPE_NUMBER

#define ATOM_TYPE_NUMBER "atom_type.atom_number"

Definition at line 23 of file mol_tags.h.

## ◆ ATOM_TYPE_OXIDATION

#define ATOM_TYPE_OXIDATION "atom_type.oxidation_number"

Definition at line 24 of file mol_tags.h.

## ◆ ATOM_TYPE_RADIUS_BOND

#define ATOM_TYPE_RADIUS_BOND "atom_type.radius_bond"

Definition at line 26 of file mol_tags.h.

## ◆ ATOM_TYPE_RADIUS_VDW

#define ATOM_TYPE_RADIUS_VDW "atom_type.radius_contact"

Definition at line 27 of file mol_tags.h.

## ◆ ATOM_TYPE_SCAT_A1

#define ATOM_TYPE_SCAT_A1 "atom_type.scat_Cromer_Mann_a1"

Definition at line 28 of file mol_tags.h.

## ◆ ATOM_TYPE_SCAT_A2

#define ATOM_TYPE_SCAT_A2 "atom_type.scat_Cromer_Mann_a2"

Definition at line 29 of file mol_tags.h.

## ◆ ATOM_TYPE_SCAT_A3

#define ATOM_TYPE_SCAT_A3 "atom_type.scat_Cromer_Mann_a3"

Definition at line 30 of file mol_tags.h.

## ◆ ATOM_TYPE_SCAT_A4

#define ATOM_TYPE_SCAT_A4 "atom_type.scat_Cromer_Mann_a4"

Definition at line 31 of file mol_tags.h.

## ◆ ATOM_TYPE_SCAT_A5

#define ATOM_TYPE_SCAT_A5 "atom_type.scat_Cromer_Mann_a5"

Definition at line 32 of file mol_tags.h.

## ◆ ATOM_TYPE_SCAT_B1

#define ATOM_TYPE_SCAT_B1 "atom_type.scat_Cromer_Mann_b1"

Definition at line 33 of file mol_tags.h.

## ◆ ATOM_TYPE_SCAT_B2

#define ATOM_TYPE_SCAT_B2 "atom_type.scat_Cromer_Mann_b2"

Definition at line 34 of file mol_tags.h.

## ◆ ATOM_TYPE_SCAT_B3

#define ATOM_TYPE_SCAT_B3 "atom_type.scat_Cromer_Mann_b3"

Definition at line 35 of file mol_tags.h.

## ◆ ATOM_TYPE_SCAT_B4

#define ATOM_TYPE_SCAT_B4 "atom_type.scat_Cromer_Mann_b4"

Definition at line 36 of file mol_tags.h.

## ◆ ATOM_TYPE_SCAT_B5

#define ATOM_TYPE_SCAT_B5 "atom_type.scat_Cromer_Mann_b5"

Definition at line 37 of file mol_tags.h.

## ◆ ATOM_TYPE_SCAT_C

#define ATOM_TYPE_SCAT_C "atom_type.scat_Cromer_Mann_c"

Definition at line 38 of file mol_tags.h.

## ◆ ATOM_TYPE_SYMBOL

#define ATOM_TYPE_SYMBOL "atom_type.symbol"

Definition at line 22 of file mol_tags.h.

## ◆ ATOM_X

#define ATOM_X "atom_site.Cartn_x"

Definition at line 68 of file mol_tags.h.

## ◆ ATOM_Y

#define ATOM_Y "atom_site.Cartn_y"

Definition at line 69 of file mol_tags.h.

## ◆ ATOM_Z

#define ATOM_Z "atom_site.Cartn_z"

Definition at line 70 of file mol_tags.h.

## ◆ BOND_RULE_BONDS

#define BOND_RULE_BONDS "bond_rule.bonds"

Definition at line 42 of file mol_tags.h.

## ◆ BOND_RULE_SYMBOL

#define BOND_RULE_SYMBOL "bond_rule.symbol"

Definition at line 41 of file mol_tags.h.

## ◆ BOND_TYPE_LENGTH

#define BOND_TYPE_LENGTH "bond_type.length"

Definition at line 47 of file mol_tags.h.

## ◆ BOND_TYPE_SYMBOL1

#define BOND_TYPE_SYMBOL1 "bond_type.symbol1"

Definition at line 45 of file mol_tags.h.

## ◆ BOND_TYPE_SYMBOL2

#define BOND_TYPE_SYMBOL2 "bond_type.symbol2"

Definition at line 46 of file mol_tags.h.

## ◆ BOND_TYPE_VDWDIST

#define BOND_TYPE_VDWDIST "bond_type.VdW_distance"

Definition at line 48 of file mol_tags.h.

## ◆ CELL_A

#define CELL_A "cell.length_a"

Definition at line 14 of file mol_tags.h.

## ◆ CELL_ALPHA

#define CELL_ALPHA "cell.angle_alpha"

Definition at line 17 of file mol_tags.h.

## ◆ CELL_B

#define CELL_B "cell.length_b"

Definition at line 15 of file mol_tags.h.

## ◆ CELL_BETA

#define CELL_BETA "cell.angle_beta"

Definition at line 18 of file mol_tags.h.

## ◆ CELL_C

#define CELL_C "cell.length_c"

Definition at line 16 of file mol_tags.h.

## ◆ CELL_GAMMA

#define CELL_GAMMA "cell.angle_gamma"

Definition at line 19 of file mol_tags.h.

## ◆ MOLECULE_FILENAME

#define MOLECULE_FILENAME "molecule.file_name"

Definition at line 112 of file mol_tags.h.

## ◆ MOLECULE_FOM

#define MOLECULE_FOM "molecule.fom"

Definition at line 122 of file mol_tags.h.

## ◆ MOLECULE_LENGTH

#define MOLECULE_LENGTH "molecule.length"

Definition at line 108 of file mol_tags.h.

## ◆ MOLECULE_MAP_FILE

#define MOLECULE_MAP_FILE "molecule.map_file_name"

Definition at line 113 of file mol_tags.h.

## ◆ MOLECULE_MAP_NUMBER

#define MOLECULE_MAP_NUMBER "molecule.map_number"

Definition at line 114 of file mol_tags.h.

## ◆ MOLECULE_NAME

#define MOLECULE_NAME "molecule.name"

Definition at line 107 of file mol_tags.h.

## ◆ MOLECULE_SELECT

#define MOLECULE_SELECT "molecule.select"

Definition at line 123 of file mol_tags.h.

## ◆ MOLECULE_SEQUENCE

#define MOLECULE_SEQUENCE "molecule.sequence"

Definition at line 109 of file mol_tags.h.

## ◆ MOLECULE_VIEW_ANGLE

#define MOLECULE_VIEW_ANGLE "molecule.view_angle"

Definition at line 121 of file mol_tags.h.

## ◆ MOLECULE_VIEW_X

#define MOLECULE_VIEW_X "molecule.view_x"

Definition at line 118 of file mol_tags.h.

## ◆ MOLECULE_VIEW_Y

#define MOLECULE_VIEW_Y "molecule.view_y"

Definition at line 119 of file mol_tags.h.

## ◆ MOLECULE_VIEW_Z

#define MOLECULE_VIEW_Z "molecule.view_z"

Definition at line 120 of file mol_tags.h.

## ◆ MOLECULE_X

#define MOLECULE_X "molecule.x"

Definition at line 115 of file mol_tags.h.

## ◆ MOLECULE_Y

#define MOLECULE_Y "molecule.y"

Definition at line 116 of file mol_tags.h.

## ◆ MOLECULE_Z

#define MOLECULE_Z "molecule.z"

Definition at line 117 of file mol_tags.h.

## ◆ RESCOIL_CODE1

#define RESCOIL_CODE1 "residue_coil.code1"

Definition at line 97 of file mol_tags.h.

## ◆ RESCOIL_POS_A

#define RESCOIL_POS_A "residue_coil.position_a"

Definition at line 98 of file mol_tags.h.

## ◆ RESCOIL_POS_B

#define RESCOIL_POS_B "residue_coil.position_b"

Definition at line 99 of file mol_tags.h.

## ◆ RESCOIL_POS_C

#define RESCOIL_POS_C "residue_coil.position_c"

Definition at line 100 of file mol_tags.h.

## ◆ RESCOIL_POS_D

#define RESCOIL_POS_D "residue_coil.position_d"

Definition at line 101 of file mol_tags.h.

## ◆ RESCOIL_POS_E

#define RESCOIL_POS_E "residue_coil.position_e"

Definition at line 102 of file mol_tags.h.

## ◆ RESCOIL_POS_F

#define RESCOIL_POS_F "residue_coil.position_f"

Definition at line 103 of file mol_tags.h.

## ◆ RESCOIL_POS_G

#define RESCOIL_POS_G "residue_coil.position_g"

Definition at line 104 of file mol_tags.h.

## ◆ RESMATRIX1_CODE1

#define RESMATRIX1_CODE1 "residue1_matrix.code1"

Definition at line 94 of file mol_tags.h.

## ◆ RESMATRIX2_CODE1

#define RESMATRIX2_CODE1 "residue2_matrix.code1"

Definition at line 95 of file mol_tags.h.

## ◆ RESMATRIX_SUBSTITUTION

#define RESMATRIX_SUBSTITUTION "residue_matrix.substitution"

Definition at line 96 of file mol_tags.h.

## ◆ RESPROP_C

#define RESPROP_C "residue_property.C"

Definition at line 90 of file mol_tags.h.

## ◆ RESPROP_CHARGE

#define RESPROP_CHARGE "residue_property.charge"

Definition at line 88 of file mol_tags.h.

## ◆ RESPROP_CODE1

#define RESPROP_CODE1 "residue_property.code1"

Definition at line 81 of file mol_tags.h.

## ◆ RESPROP_CODE3

#define RESPROP_CODE3 "residue_property.code3"

Definition at line 82 of file mol_tags.h.

## ◆ RESPROP_CODON

#define RESPROP_CODON "residue_property.codon"

Definition at line 80 of file mol_tags.h.

## ◆ RESPROP_EXTENSION

#define RESPROP_EXTENSION "residue_property.extension"

Definition at line 85 of file mol_tags.h.

## ◆ RESPROP_EXTSTDEV

#define RESPROP_EXTSTDEV "residue_property.extstdev"

Definition at line 86 of file mol_tags.h.

## ◆ RESPROP_H

#define RESPROP_H "residue_property.H"

Definition at line 89 of file mol_tags.h.

## ◆ RESPROP_HYDROPHOBICITY

#define RESPROP_HYDROPHOBICITY "residue_property.hydrophobicity"

Definition at line 87 of file mol_tags.h.

## ◆ RESPROP_MASS

#define RESPROP_MASS "residue_property.mass"

Definition at line 83 of file mol_tags.h.

## ◆ RESPROP_N

#define RESPROP_N "residue_property.N"

Definition at line 91 of file mol_tags.h.

## ◆ RESPROP_O

#define RESPROP_O "residue_property.O"

Definition at line 92 of file mol_tags.h.

## ◆ RESPROP_S

#define RESPROP_S "residue_property.S"

Definition at line 93 of file mol_tags.h.

## ◆ RESPROP_VOLUME

#define RESPROP_VOLUME "residue_property.volume"

Definition at line 84 of file mol_tags.h.