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<section xmlns="http://docbook.org/ns/docbook" version="5.0" xmlns:xlink="http://www.w3.org/1999/xlink" xml:id="_dir_5dd65160827af56e6353642206b80129">
<title>/Users/bernard/b20/bsoft/src/model Directory Reference</title>
<indexterm><primary>/Users/bernard/b20/bsoft/src/model Directory Reference</primary></indexterm>
<simplesect>
    <title>Files    </title>
        <itemizedlist>
            <listitem><para>file <link linkend="_model__color_8cpp">model_color.cpp</link></para>

<para>Functions to color models. </para>
</listitem>
            <listitem><para>file <link linkend="_model__compare_8cpp">model_compare.cpp</link></para>

<para>Functions to compare models and components. </para>
</listitem>
            <listitem><para>file <link linkend="_model__create_8cpp">model_create.cpp</link></para>

<para>A tool to expand models. </para>
</listitem>
            <listitem><para>file <link linkend="_model__extract__build_8cpp">model_extract_build.cpp</link></para>

<para>Functions to extract subvolumes and build new maps. </para>
</listitem>
            <listitem><para>file <link linkend="_model__links_8cpp">model_links.cpp</link></para>

<para>Library routines used for model links processing. </para>
</listitem>
            <listitem><para>file <link linkend="_model__map_8cpp">model_map.cpp</link></para>

<para>Function to generate a map from a model. </para>
</listitem>
            <listitem><para>file <link linkend="_model__mask_8cpp">model_mask.cpp</link></para>

<para>Generating a mask from an atomic model. </para>
</listitem>
            <listitem><para>file <link linkend="_model__mechanics_8cpp">model_mechanics.cpp</link></para>

<para>Functions to do molecular mechanics. </para>
</listitem>
            <listitem><para>file <link linkend="_model__multifit_8cpp">model_multifit.cpp</link></para>

<para>Searching for a template in a map and returning multiple hits in a model. </para>
</listitem>
            <listitem><para>file <link linkend="_model__neighbors_8cpp">model_neighbors.cpp</link></para>

<para>Functions to manipulate model component neighbors. </para>
</listitem>
            <listitem><para>file <link linkend="_model__occupancy_8cpp">model_occupancy.cpp</link></para>

<para>Library routines to count components in maps. </para>
</listitem>
            <listitem><para>file <link linkend="_model__path_8cpp">model_path.cpp</link></para>

<para>Library routines used for model processing. </para>
</listitem>
            <listitem><para>file <link linkend="_model__plane_8cpp">model_plane.cpp</link></para>

<para>Library routines used for plane models. </para>
</listitem>
            <listitem><para>file <link linkend="_model__poly_8cpp">model_poly.cpp</link></para>

<para>Functions to manipulate polyhedral coordinate files. </para>
</listitem>
            <listitem><para>file <link linkend="_model__poly__delta_8cpp">model_poly_delta.cpp</link></para>

<para>Functions to generate deltagraph polyhedra. </para>
</listitem>
            <listitem><para>file <link linkend="_model__poly__spiral_8cpp">model_poly_spiral.cpp</link></para>

<para>Functions to generate polyhedra using the spiral algorithm. </para>
</listitem>
            <listitem><para>file <link linkend="_model__select_8cpp">model_select.cpp</link></para>

<para>Library routines used for model and component selection. </para>
</listitem>
            <listitem><para>file <link linkend="_model__shell_8cpp">model_shell.cpp</link></para>

<para>Library routines used for shell model processing. </para>
</listitem>
            <listitem><para>file <link linkend="_model__symmetry_8cpp">model_symmetry.cpp</link></para>

<para>Library routines used for model symmetry operations. </para>
</listitem>
            <listitem><para>file <link linkend="_model__transform_8cpp">model_transform.cpp</link></para>

<para>Library routines used for model transformation. </para>
</listitem>
            <listitem><para>file <link linkend="_model__util_8cpp">model_util.cpp</link></para>

<para>Library routines used for model processing. </para>
</listitem>
            <listitem><para>file <link linkend="_model__views_8cpp">model_views.cpp</link></para>

<para>Library routines used for analyzing the views of components in models. </para>
</listitem>
        </itemizedlist>
</simplesect>
</section>
