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<section xmlns="http://docbook.org/ns/docbook" version="5.0" xmlns:xlink="http://www.w3.org/1999/xlink" xml:id="_dir_7673ec780970b264223275c6ce2fb0e1">
<title>/Users/bernard/b20/bsoft/src/img Directory Reference</title>
<indexterm><primary>/Users/bernard/b20/bsoft/src/img Directory Reference</primary></indexterm>
<simplesect>
    <title>Files    </title>
        <itemizedlist>
            <listitem><para>file <link linkend="__bimage_8cpp">Bimage.cpp</link></para>

<para>Methods for the image class. </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__align_8cpp">Bimage_align.cpp</link></para>

<para>Functions to align images. </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__background_8cpp">Bimage_background.cpp</link></para>

<para>Library routines for manipulating image backgrounds. </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__bin_8cpp">Bimage_bin.cpp</link></para>

<para>Library routines for binning images. </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__color_8cpp">Bimage_color.cpp</link></para>

<para>Library routines for mangaing color images. </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__combine_8cpp">Bimage_combine.cpp</link></para>

<para>Functions to combine two images in various ways. </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__complex_8cpp">Bimage_complex.cpp</link></para>

<para>Routines to convert complex data sets. </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__correlate_8cpp">Bimage_correlate.cpp</link></para>

<para>Cross correlation functions. </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__edit_8cpp">Bimage_edit.cpp</link></para>

<para>Library routines used for editing image contents. </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__extract_8cpp">Bimage_extract.cpp</link></para>

<para>Library routines to extract parts of images. </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__fft_8cpp">Bimage_fft.cpp</link></para>

<para>General FFT for n-dimensional data. </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__filter_8cpp">Bimage_filter.cpp</link></para>

<para>Library routines used for filtering images. </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__fspace_8cpp">Bimage_fspace.cpp</link></para>

<para>Library routines used for modifying reciprocal space amplitudes. </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__helix_8cpp">Bimage_helix.cpp</link></para>

<para>Dealing with images with helical symmetry. </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__histogram_8cpp">Bimage_histogram.cpp</link></para>

<para>Library routines to calculate histograms for images. </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__mask_8cpp">Bimage_mask.cpp</link></para>

<para>Methods for binary mask creation and manipulation. </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__montage_8cpp">Bimage_montage.cpp</link></para>

<para>Functions to montage images for display. </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__nad_8cpp">Bimage_nad.cpp</link></para>

<para>Denoising by nonlinear anisotropic diffusion: Coherence and edge enhancing diffusion. </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__noise_8cpp">Bimage_noise.cpp</link></para>

<para>Functions for generating noise images. </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__polar_8cpp">Bimage_polar.cpp</link></para>

<para>Library routines for polar and spherical transformations and calculations. </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__powerspectrum_8cpp">Bimage_powerspectrum.cpp</link></para>

<para>Functions for calculating and using power spectra in electron micrographs. </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__project_8cpp">Bimage_project.cpp</link></para>

<para>Functions for projections. </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__reconstruct_8cpp">Bimage_reconstruct.cpp</link></para>

<para>2D and 3D reconstruction from single particle images </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__rescale_8cpp">Bimage_rescale.cpp</link></para>

<para>Library routines to rescale images. </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__resize_8cpp">Bimage_resize.cpp</link></para>

<para>Library routines to resize images. </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__resolution_8cpp">Bimage_resolution.cpp</link></para>

<para>Library routines to estimate resolution. </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__search_8cpp">Bimage_search.cpp</link></para>

<para>Searches orientation space for the best fit of a 3D map to a template. </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__segment_8cpp">Bimage_segment.cpp</link></para>

<para>Methods for segmentation. </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__stats_8cpp">Bimage_stats.cpp</link></para>

<para>Functions to calculate statistics on image regions. </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__symmetry_8cpp">Bimage_symmetry.cpp</link></para>

<para>Symmetry function library for crystallography. </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__topo_8cpp">Bimage_topo.cpp</link></para>

<para>Functions to convert between 2D topology images to 3D surfaces. </para>
</listitem>
            <listitem><para>file <link linkend="__bimage__transform_8cpp">Bimage_transform.cpp</link></para>

<para>Library routines for transforming images. </para>
</listitem>
            <listitem><para>file <link linkend="_img__combine_8cpp">img_combine.cpp</link></para>

<para>Functions to combine two images in various ways. </para>
</listitem>
        </itemizedlist>
</simplesect>
</section>
