<?xml version='1.0' encoding='UTF-8' standalone='no'?>
<section xmlns="http://docbook.org/ns/docbook" version="5.0" xmlns:xlink="http://www.w3.org/1999/xlink" xml:id="_bheight_8cpp">
<title>/Users/bernard/b20/bsoft/src/bheight.cpp File Reference</title>
<indexterm><primary>/Users/bernard/b20/bsoft/src/bheight.cpp</primary></indexterm>
<para>

<para>Projecting a 3D map and calculating comparison statistics of the projections. </para>
 
</para>
<programlisting>#include &quot;rwimg.h&quot;
#include &quot;symmetry.h&quot;
#include &quot;ps_views.h&quot;
#include &quot;linked_list.h&quot;
#include &quot;options.h&quot;
#include &quot;utilities.h&quot;
#include &quot;timer.h&quot;
</programlisting><simplesect>
    <title>Functions    </title>
        <itemizedlist>
            <listitem><para>int <link linkend="_bheight_8cpp_1a3c04138a5bfe5d72780bb7e82a18e627">main</link> (int argc, char **argv)</para>
</listitem>
        </itemizedlist>
</simplesect>
<simplesect>
    <title>Variables    </title>
        <itemizedlist>
            <listitem><para>int <link linkend="_bheight_8cpp_1a0b2caeb4b6f130be43e5a2f0267dd453">verbose</link></para>
</listitem>
            <listitem><para>const char * <link linkend="_bheight_8cpp_1a4de0ad4c7190962494815c0fa7f948df">use</link> []</para>
</listitem>
        </itemizedlist>
</simplesect>
<section>
<title>Detailed Description</title>

<para>Projecting a 3D map and calculating comparison statistics of the projections. </para>

<para><formalpara><title>Author: </title>

<para>Bernard Heymann </para>
</formalpara>
<formalpara><title>Date: </title>

<para>Created: 20170613 </para>

<para>Modified: 20170613 </para>
</formalpara>
</para>
</section>
<section>
<title>Function Documentation</title>
<anchor xml:id="_bheight_8cpp_1a3c04138a5bfe5d72780bb7e82a18e627"/>    <section>
    <title>main()</title>
<indexterm><primary>main</primary><secondary>bheight.cpp</secondary></indexterm>
<indexterm><primary>bheight.cpp</primary><secondary>main</secondary></indexterm>
<para><computeroutput>int main (int argc, char ** argv)</computeroutput></para><para>
Definition at line 50 of file bheight.cpp.</para>
</section>
</section>
<section>
<title>Variable Documentation</title>
<anchor xml:id="_bheight_8cpp_1a4de0ad4c7190962494815c0fa7f948df"/>    <section>
    <title>use</title>
<indexterm><primary>use</primary><secondary>bheight.cpp</secondary></indexterm>
<indexterm><primary>bheight.cpp</primary><secondary>use</secondary></indexterm>
<para><computeroutput>const char* use[]</computeroutput></para><emphasis role="strong">Initial value:</emphasis><programlisting>=&#32;{
<emphasis role="stringliteral">&quot;&#32;&quot;</emphasis>,
<emphasis role="stringliteral">&quot;Usage:&#32;bheight&#32;[options]&#32;input.img&#32;output.img&quot;</emphasis>,
<emphasis role="stringliteral">&quot;---------------------------------------------&quot;</emphasis>,
<emphasis role="stringliteral">&quot;Calculates&#32;2D&#32;height&#32;images&#32;from&#32;a&#32;3D&#32;map.&quot;</emphasis>,
<emphasis role="stringliteral">&quot;&#32;&quot;</emphasis>,
<emphasis role="stringliteral">&quot;Actions:&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-axis&#32;y&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;Project&#32;down&#32;a&#32;major&#32;axis&#32;(x,&#32;y,&#32;z&#32;or&#32;0,&#32;1,&#32;2).&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-View&#32;0.3,-0.5,0.8,33&#32;&#32;&#32;&#32;View&#32;to&#32;generate&#32;symmetry-related&#32;projections.&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-Tilt&#32;-65,72,2.5,55&#32;&#32;&#32;&#32;&#32;&#32;Tilt&#32;series&#32;of&#32;projections&#32;with&#32;angle&#32;min,&#32;max,&#32;step&#32;and&#32;axis&#32;angle.&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-side&#32;15&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;Generate&#32;side&#32;view&#32;projections&#32;within&#32;the&#32;given&#32;angle&#32;from&#32;the&#32;equator.&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-random&#32;24&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;Generate&#32;a&#32;number&#32;of&#32;random&#32;projections.&quot;</emphasis>,
<emphasis role="stringliteral">&quot;&#32;&quot;</emphasis>,
<emphasis role="stringliteral">&quot;Parameters:&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-verbose&#32;7&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;Verbosity&#32;of&#32;output.&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-datatype&#32;u&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;Force&#32;writing&#32;of&#32;a&#32;new&#32;data&#32;type.&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-origin&#32;10,-10,20&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;Origin&#32;for&#32;rotation&#32;(voxels,&#32;default&#32;0,0,0).&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-sampling&#32;2,3.5,1&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;Sampling&#32;(angstrom/voxel,&#32;a&#32;single&#32;value&#32;sets&#32;all&#32;three).&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-symmetry&#32;D6&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;Symmetry:&#32;Point&#32;group&#32;identifier.&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-angles&#32;8,6&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;Step&#32;sizes&#32;for&#32;theta&#32;and&#32;phi&#32;in&#32;the&#32;asymmetric&#32;unit,&#32;one&#32;value&#32;sets&#32;both.&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-threshold&#32;1.2&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;&#32;Density&#32;threshold&#32;to&#32;indicate&#32;boundary&#32;of&#32;object&#32;(default&#32;0).&quot;</emphasis>,
<emphasis role="stringliteral">&quot;&#32;&quot;</emphasis>,
<emphasis role="stringliteral">&quot;Output:&quot;</emphasis>,
<emphasis role="stringliteral">&quot;-Plotviews&#32;plot.ps&#32;&#32;&#32;&#32;&#32;&#32;&#32;Output&#32;postscript&#32;file&#32;with&#32;a&#32;plot&#32;of&#32;projection&#32;vectors.&quot;</emphasis>,
<emphasis role="stringliteral">&quot;&#32;&quot;</emphasis>,
NULL
}
</programlisting><para>
Definition at line 22 of file bheight.cpp.</para>
    </section><anchor xml:id="_bheight_8cpp_1a0b2caeb4b6f130be43e5a2f0267dd453"/>    <section>
    <title>verbose</title>
<indexterm><primary>verbose</primary><secondary>bheight.cpp</secondary></indexterm>
<indexterm><primary>bheight.cpp</primary><secondary>verbose</secondary></indexterm>
<para><computeroutput>int verbose</computeroutput></para></section>
</section>
</section>
