| Bsoft 2.0.5 Bernard's software package

Here is a list of all file members with links to the files they belong to:

### - s -

- SAMP_DIST : rwSUPRIM.h
- saveAsTextFile() : btext.tcl
- saveCommand() : brun_panel.tcl
- saveMontage() : bshow_image.tcl
- saveMontageSelection() : bshow_image.tcl
- saveTemplate() : bshow_boxes.tcl
- saveTextFile() : btext.tcl
- sb() : rwDM.cpp
- scalar() : Vector3.h
- SCharacter : utilities.h
- scramrig() : fft_tool.cpp , fft_tool.h
- SecondaryType : rwmolecule.h
- segment_highest_neighbor() : Bimage_segment.cpp
- segment_lowest_neighbor() : Bimage_segment.cpp
- segment_setup_neighbors() : Bimage_segment.cpp
- segments_setup_neighbors() : Bimage_segment.cpp
- select_numbers() : utilities.h , utilities.cpp
- selectAFile() : bshow_param.tcl
- selectColor() : bshow_misc.tcl
- selectCursor() : bshow_misc.tcl
- Selection() : bshow_select.tcl
- selectMicrograph() : bshow_param.tcl
- selectParticles() : bshow_boxes.tcl
- selectProgram() : brun_panel.tcl
- separate_ri() : sin_gal.cpp
- seq_aligned_hydrophobicity() : seq_analysis.h , seq_analysis.cpp
- seq_aligned_identity() : seq_analysis.cpp , seq_analysis.h
- seq_aligned_information() : seq_analysis.h , seq_analysis.cpp
- seq_aligned_profile() : seq_analysis.h , seq_analysis.cpp
- seq_aligned_similarity() : seq_analysis.h , seq_analysis.cpp
- seq_aligned_weight() : seq_analysis.cpp
- seq_complement_all() : seq_util.h , seq_util.cpp
- seq_correlated_mutation() : seq_analysis.h , seq_analysis.cpp
- seq_count_adj_pentagons() : model_poly_spiral.cpp
- seq_dot_plot() : seq_align.h , seq_align.cpp
- seq_dot_plot_best_segments() : seq_align.h , seq_align.cpp
- seq_dot_plot_interpret() : seq_align.h , seq_align.cpp
- seq_dot_plot_mov_avg() : seq_align.h , seq_align.cpp
- seq_elements() : seq_util.h , seq_util.cpp
- seq_find_best_offset() : seq_align.h , seq_align.cpp
- seq_find_dna() : seq_util.h , seq_util.cpp
- seq_find_protein() : seq_util.h , seq_util.cpp
- seq_find_protein_in_dna() : seq_util.h , seq_util.cpp
- seq_frequency_analysis() : seq_analysis.cpp , seq_analysis.h
- seq_mass() : seq_util.h , seq_util.cpp
- seq_pair_align() : seq_align.h , seq_align.cpp
- seq_show() : seq_util.h , seq_util.cpp
- seq_show_segments() : seq_align.h , seq_align.cpp
- seq_translate_all() : seq_util.h , seq_util.cpp
- sequence_translate() : seq_util.h , seq_util.cpp
- set_CCP4_machine_stamp() : rwCCP4.h , rwCCP4.cpp
- set_component_radius() : tcltk_bmodel.cpp
- set_link_radius() : tcltk_bmodel.cpp
- set_tile_size() : Bimage_powerspectrum.cpp
- set_value_with_datatype() : mg_tomo_rec.cpp
- setAstigmatismAngle() : bshow_ctf.tcl
- setBoxSize() : bshow_boxes.tcl
- setColor() : bshow_model.tcl
- setComponentRadius() : bshow_model.tcl
- setCTFparam() : bshow_ctf.tcl
- setCTFPixelSize() : bshow_ctf.tcl
- setDefocusAverage() : bshow_ctf.tcl
- setDefocusDeviation() : bshow_ctf.tcl
- setDiffOrigin() : bshow_graph.tcl
- setEdge() : bshow_tomo.tcl
- setFOMcutoff() : bshow_misc.tcl
- setImage() : bshow_scales.tcl
- setImageOrigin() : bshow_image.tcl
- setImageType() : bshow_image.tcl
- setLayerLineIndex() : bshow_helix.tcl
- setLayerLineIndex_and_DestroyWindow() : bshow_helix.tcl
- setLinkRadius() : bshow_model.tcl
- setMax() : bshow_scales.tcl
- setMgParam() : bshow_param.tcl
- setMin() : bshow_scales.tcl
- setNodeRadius() : bshow_filament.tcl
- setOrigin() : bshow_image.tcl
- setPixelsize() : bshow_misc.tcl
- setPixelSize_and_DestroyWindow() : bshow_ctf.tcl
- setPreferences() : bshow_misc.tcl
- setScale() : bshow_scales.tcl
- setScaleDialog() : bshow_scales.tcl
- setScaleOK() : bshow_scales.tcl
- setSelection() : bshow_model.tcl
- setSelectionAndDestroy() : bshow_param.tcl
- setSlice() : bshow_scales.tcl
- setSpotIndices() : bshow_xtal.tcl
- setSpotIndices_and_DestroyWindow() : bshow_xtal.tcl
- setStep() : bshow_ctf.tcl
- setTemplateScale() : bshow_boxes.tcl
- setTiltAxis() : bshow_tomo.tcl
- setTilts_and_DestroyWindow() : bshow_tomo.tcl
- setup_images() : bfind.cpp
- setupCheckEntry() : bshow_misc.tcl
- setupCheckSizeEntry() : bshow_misc.tcl
- setupControls() : bshow_misc.tcl
- setupEntry() : bshow_misc.tcl
- setupFileBrowser() : bshow_file.tcl
- setupFileMenu() : bshow_file.tcl
- setupGraphVariables() : bshow_graph.tcl
- setupImageMenu() : bshow_image.tcl
- setupMicrographButtons() : bshow_param.tcl
- setupMicrographID() : bshow_param.tcl
- setupModelMenu() : bshow_model.tcl
- setupNewFileEntry() : bshow_misc.tcl
- setupParameterMenu() : bshow_param.tcl
- setupScales() : bshow_scales.tcl
- setupScrollEntry() : bshow_misc.tcl
- setupSizeEntry() : bshow_misc.tcl
- setViews() : bshow_model.tcl
- Shell() : bshow_model.tcl
- shell_edge() : Bimage_edit.cpp
- shift_phase() : gal_ricoI.cpp
- Short : utilities.h
- show() : rwDM.cpp
- show_block() : bfile.cpp
- show_block_hex() : bfile.cpp
- show_char() : bfile.cpp
- show_structure() : bfile.cpp
- show_table() : bfile.cpp
- show_tags() : rwstar.h , rwstar.cpp
- show_views() : View.cpp , View.h
- showCoords() : bshow_misc.tcl
- showFrequency() : bshow_ctf.tcl
- showHelp() : bshow_misc.tcl
- showInfo() : btext.tcl
- showPoint() : bshow_graph.tcl
- showSelectedParticles() : bshow_boxes.tcl
- showTip() : bshow_misc.tcl
- showURL() : bshow_misc.tcl
- side_views() : symmetry.h , symmetry.cpp
- SIGNED_INT16_DATA : rwDM.h
- SIGNED_INT32_DATA : rwDM.h
- SIGNED_INT8_DATA : rwDM.h
- simplex_fit_tilt_intensities() : mg_tomography.cpp
- simplex_gauss_R() : Bimage_histogram.cpp
- simplex_poisson_R() : Bimage_histogram.cpp
- sin_gal() : sin_gal.cpp , sin_gal.h
- SLICE_ORG : rwSUPRIM.h
- smallest_prime() : math_util.h , math_util.cpp
- SMALLFLOAT : utilities.h
- SPESIZE : rwSPE.h
- sphere() : radon_util.cpp , radon_util.h
- spider_euler_from_view() : rwSPIDER.cpp
- SPIDERSIZE : rwSPIDER.h
- split() : string_util.h , string_util.cpp
- spot_count() : tcltk_bxtal.cpp
- spot_create() : tcltk_bxtal.cpp
- spot_delete() : tcltk_bxtal.cpp
- spot_fom() : tcltk_bxtal.cpp
- spot_generate() : tcltk_bxtal.cpp
- spot_ids() : tcltk_bxtal.cpp
- spot_location() : tcltk_bxtal.cpp
- spot_mask() : tcltk_bxtal.cpp
- spot_move() : tcltk_bxtal.cpp
- spot_reindex() : tcltk_bxtal.cpp
- spot_select() : tcltk_bxtal.cpp
- spot_unitcell_vectors() : tcltk_bxtal.cpp
- spotCreateSelect() : bshow_xtal.tcl
- spotDelete() : bshow_xtal.tcl
- spotDisplayLocation() : bshow_xtal.tcl
- spotDraw() : bshow_xtal.tcl
- spotGenerate() : bshow_xtal.tcl
- spotGenerate_and_DestroyWindow() : bshow_xtal.tcl
- spotMask() : bshow_xtal.tcl
- spotMove() : bshow_xtal.tcl
- spotsDeleteAll() : bshow_xtal.tcl
- spotsDrawAll() : bshow_xtal.tcl
- spotSelect() : bshow_xtal.tcl
- SQR : matrix.cpp
- Standard : Bimage.h
- star_list_comments() : rwstar.h , rwstar.cpp
- star_set_string_lengths() : rwstar.cpp , rwstar.h
- star_to_project() : rwmgSTAR.cpp
- star_update_comment() : rwstar.h , rwstar.cpp
- StarType : rwstar.h
- statistical_region_merging() : Bimage_segment.cpp
- Strand : rwmolecule.h
- string2byte() : bfile.cpp
- string_add() : Bstring.h , Bstring.cpp , Bstring.h , Bstring.cpp
- string_bytes() : bfile.cpp
- string_catenate() : Bstring.cpp , Bstring.h
- string_kill() : Bstring.cpp , Bstring.h
- string_sort() : Bstring.cpp , Bstring.h
- StringItem : rwstar.h
- strucfac_from_starblock() : rwmgSTAR.cpp
- strucfac_to_starblock() : rwmgSTAR.cpp
- structurefactor_copy() : mg_processing.cpp
- superpixel_from_json() : bsupix.cpp
- support_f() : pocs_tool.cpp , pocs_tool.h
- suprim_euler_from_view() : rwSUPRIM.cpp
- SUPRIMSIZE : rwSUPRIM.h
- swap_block() : bfile.cpp
- swap_header() : rwBIORAD.cpp
- swapbytes() : utilities.h , utilities.cpp , utilities.h
- SWAPTRIG : rwimg.h
- switchImage() : bshow_image.tcl
- sym_matrices_from_text_list() : symmetry.cpp , symmetry.h
- sym_show_matrices() : symmetry.h , symmetry.cpp
- sym_show_operational_matrices() : symmetry.cpp , symmetry.h
- sym_show_pdb_matrices() : symmetry.cpp , symmetry.h
- SYMMETRY : sym_tags.h
- SYMMETRY_AXIS_ORDER : sym_tags.h
- SYMMETRY_AXIS_X : sym_tags.h
- SYMMETRY_AXIS_Y : sym_tags.h
- SYMMETRY_AXIS_Z : sym_tags.h
- symmetry_clean_pointgroup() : symmetry.cpp , symmetry.h
- SYMMETRY_EQUIVID : sym_tags.h
- SYMMETRY_EQUIVXYZ : sym_tags.h
- symmetry_get_all_matrices() : symmetry.h , symmetry.cpp
- symmetry_get_all_views() : symmetry.h , symmetry.cpp
- symmetry_get_axes() : symmetry.cpp , symmetry.h
- symmetry_helical_label() : symmetry.cpp , symmetry.h
- SYMMETRY_NAME : sym_tags.h
- SYMMETRY_NUMBER : sym_tags.h
- symmetry_order() : symmetry.h , symmetry.cpp
- SYMMETRY_PG_NUMBER : sym_tags.h
- SYMMETRY_POINT_GROUP : sym_tags.h
- symmetry_rotate_to_axis() : symmetry.h , symmetry.cpp
- SYMMETRY_TYPE : sym_tags.h
- SYMP2 : rwSUPRIM.h
- system_memory() : utilities.cpp , utilities.h
- system_processors() : utilities.h , utilities.cpp
- SysType : utilities.h
- systype() : utilities.cpp , utilities.h